Gene : Glyma.17G220500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR22763:SF50 - E3 UBIQUITIN-PROTEIN LIGASE AIP2 Genomic Order:  2205
Name:  ? Glyma.17G220500 Secondary Identifier:  ? PAC:30480837
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G220500 0.5kb upstream 0.5kb upstream 3558   true Chr17: 37250614-37254171 Glycine max
Glyma.17G220500 0.5kb upstream 0.5kb upstream 500   false Chr17: 37253672-37254171 Glycine max
Glyma.17G220500 0.5kb downstream 0.5kb downstream 3558   true Chr17: 37250114-37253671 Glycine max
Glyma.17G220500 0.5kb downstream 0.5kb downstream 500   false Chr17: 37250114-37250613 Glycine max
Glyma.17G220500 1.0kb upstream 1.0kb upstream 4058   true Chr17: 37250614-37254671 Glycine max
Glyma.17G220500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 37253672-37254671 Glycine max
Glyma.17G220500 1.0kb downstream 1.0kb downstream 4058   true Chr17: 37249614-37253671 Glycine max
Glyma.17G220500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 37249614-37250613 Glycine max
Glyma.17G220500 2.0kb upstream 2.0kb upstream 5058   true Chr17: 37250614-37255671 Glycine max
Glyma.17G220500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 37253672-37255671 Glycine max
Glyma.17G220500 2.0kb downstream 2.0kb downstream 5058   true Chr17: 37248614-37253671 Glycine max
Glyma.17G220500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 37248614-37250613 Glycine max
Glyma.17G220500 5.0kb upstream 5.0kb upstream 8058   true Chr17: 37250614-37258671 Glycine max
Glyma.17G220500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 37253672-37258671 Glycine max
Glyma.17G220500 5.0kb downstream 5.0kb downstream 8058   true Chr17: 37245614-37253671 Glycine max
Glyma.17G220500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 37245614-37250613 Glycine max
Glyma.17G220500 10.0kb upstream 10.0kb upstream 13058   true Chr17: 37250614-37263671 Glycine max
Glyma.17G220500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 37253672-37263671 Glycine max
Glyma.17G220500 10.0kb downstream 10.0kb downstream 13058   true Chr17: 37240614-37253671 Glycine max
Glyma.17G220500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 37240614-37250613 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026169 5273 Angiosperm View MSA
122312230 5265 Fabidae View MSA
124060743 5270 Rosid View MSA
123738156 5271 Pentapetalae View MSA
122787757 5272 Eudicot View MSA
123429130 5275 Viridiplantae View MSA
121350344 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.1402 0.0 38.3361    
cufflinks 12.0627 0.0 33.068   Low
cufflinks 32.5742 0.0 87.2805 High High
cufflinks 13.4484 0.0 36.5151    
cufflinks 16.2004 0.0 43.5776    
cufflinks 45.3191 0.0 123.306 High High
cufflinks 14.5713 0.0 39.4062    
cufflinks 20.3305 0.0 54.3209    
cufflinks 20.0057 0.0 53.4805 High  
cufflinks 6.746        
cufflinks 13.777     High High
cufflinks 9.14     High  
cufflinks 8.998     High  
cufflinks 7.784     High  
cufflinks 5.032       Low
cufflinks 8.528     High  
cufflinks 9.309     High  
cufflinks 5.891       Low
cufflinks 4.938       Low
cufflinks 7.371     High  
cufflinks 9.829     High  
cufflinks 7.241     High  
cufflinks 6.184        
cufflinks 14.824     High High
cufflinks 7.353     High  
cufflinks 12.418     High High

0 Strain