Gene : Glyma.17G209700 G. max Wm82.a2.v1
Defline:  (1 of 113) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2097
Name:  ? Glyma.17G209700 Secondary Identifier:  ? PAC:30481114
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G209700 0.5kb upstream 0.5kb upstream 4342   true Chr17: 34585968-34590309 Glycine max
Glyma.17G209700 0.5kb upstream 0.5kb upstream 500   false Chr17: 34585968-34586467 Glycine max
Glyma.17G209700 0.5kb downstream 0.5kb downstream 4342   true Chr17: 34586468-34590809 Glycine max
Glyma.17G209700 0.5kb downstream 0.5kb downstream 500   false Chr17: 34590310-34590809 Glycine max
Glyma.17G209700 1.0kb upstream 1.0kb upstream 4842   true Chr17: 34585468-34590309 Glycine max
Glyma.17G209700 1.0kb upstream 1.0kb upstream 1000   false Chr17: 34585468-34586467 Glycine max
Glyma.17G209700 1.0kb downstream 1.0kb downstream 4842   true Chr17: 34586468-34591309 Glycine max
Glyma.17G209700 1.0kb downstream 1.0kb downstream 1000   false Chr17: 34590310-34591309 Glycine max
Glyma.17G209700 2.0kb upstream 2.0kb upstream 5842   true Chr17: 34584468-34590309 Glycine max
Glyma.17G209700 2.0kb upstream 2.0kb upstream 2000   false Chr17: 34584468-34586467 Glycine max
Glyma.17G209700 2.0kb downstream 2.0kb downstream 5842   true Chr17: 34586468-34592309 Glycine max
Glyma.17G209700 2.0kb downstream 2.0kb downstream 2000   false Chr17: 34590310-34592309 Glycine max
Glyma.17G209700 5.0kb upstream 5.0kb upstream 8842   true Chr17: 34581468-34590309 Glycine max
Glyma.17G209700 5.0kb upstream 5.0kb upstream 5000   false Chr17: 34581468-34586467 Glycine max
Glyma.17G209700 5.0kb downstream 5.0kb downstream 8842   true Chr17: 34586468-34595309 Glycine max
Glyma.17G209700 5.0kb downstream 5.0kb downstream 5000   false Chr17: 34590310-34595309 Glycine max
Glyma.17G209700 10.0kb upstream 10.0kb upstream 13842   true Chr17: 34576468-34590309 Glycine max
Glyma.17G209700 10.0kb upstream 10.0kb upstream 10000   false Chr17: 34576468-34586467 Glycine max
Glyma.17G209700 10.0kb downstream 10.0kb downstream 13842   true Chr17: 34586468-34600309 Glycine max
Glyma.17G209700 10.0kb downstream 10.0kb downstream 10000   false Chr17: 34590310-34600309 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301504 5265 Fabidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.19476 0.0 6.08119    
cufflinks 0.807743 0.0 4.49527    
cufflinks 0.580386 0.0 3.43647    
cufflinks 0.776071 0.0 3.37971    
cufflinks 1.52281 0.0 7.84752   High
cufflinks 0.280391 0.0 1.40037 Low Low
cufflinks 0.927471 0.0 3.82403    
cufflinks 0.927795 0.0 5.02416    
cufflinks 1.13672 0.0 4.50794    
cufflinks 0.167        
cufflinks 0.225        
cufflinks 0.35        
cufflinks 0.669       High
cufflinks 1.012       High
cufflinks 0.291        
cufflinks 0.161       Low
cufflinks 0.293        
cufflinks 0.299        
cufflinks 0.437        
cufflinks 0.262        
cufflinks 0.199        
cufflinks 0.162       Low
cufflinks 0.227        
cufflinks 0.235        
cufflinks 0.166        
cufflinks 0.23        

0 Strain