Gene : Glyma.17G234900 G. max Wm82.a2.v1
Defline:  (1 of 4) PF15811 - Small VCP/p97-interacting protein (SVIP) Genomic Order:  2349
Name:  ? Glyma.17G234900 Secondary Identifier:  ? PAC:30481377
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G234900 0.5kb upstream 0.5kb upstream 3459   true Chr17: 39008100-39011558 Glycine max
Glyma.17G234900 0.5kb upstream 0.5kb upstream 500   false Chr17: 39008100-39008599 Glycine max
Glyma.17G234900 0.5kb downstream 0.5kb downstream 3459   true Chr17: 39008600-39012058 Glycine max
Glyma.17G234900 0.5kb downstream 0.5kb downstream 500   false Chr17: 39011559-39012058 Glycine max
Glyma.17G234900 1.0kb upstream 1.0kb upstream 3959   true Chr17: 39007600-39011558 Glycine max
Glyma.17G234900 1.0kb upstream 1.0kb upstream 1000   false Chr17: 39007600-39008599 Glycine max
Glyma.17G234900 1.0kb downstream 1.0kb downstream 3959   true Chr17: 39008600-39012558 Glycine max
Glyma.17G234900 1.0kb downstream 1.0kb downstream 1000   false Chr17: 39011559-39012558 Glycine max
Glyma.17G234900 2.0kb upstream 2.0kb upstream 4959   true Chr17: 39006600-39011558 Glycine max
Glyma.17G234900 2.0kb upstream 2.0kb upstream 2000   false Chr17: 39006600-39008599 Glycine max
Glyma.17G234900 2.0kb downstream 2.0kb downstream 4959   true Chr17: 39008600-39013558 Glycine max
Glyma.17G234900 2.0kb downstream 2.0kb downstream 2000   false Chr17: 39011559-39013558 Glycine max
Glyma.17G234900 5.0kb upstream 5.0kb upstream 7959   true Chr17: 39003600-39011558 Glycine max
Glyma.17G234900 5.0kb upstream 5.0kb upstream 5000   false Chr17: 39003600-39008599 Glycine max
Glyma.17G234900 5.0kb downstream 5.0kb downstream 7959   true Chr17: 39008600-39016558 Glycine max
Glyma.17G234900 5.0kb downstream 5.0kb downstream 5000   false Chr17: 39011559-39016558 Glycine max
Glyma.17G234900 10.0kb upstream 10.0kb upstream 12959   true Chr17: 38998600-39011558 Glycine max
Glyma.17G234900 10.0kb upstream 10.0kb upstream 10000   false Chr17: 38998600-39008599 Glycine max
Glyma.17G234900 10.0kb downstream 10.0kb downstream 12959   true Chr17: 39008600-39021558 Glycine max
Glyma.17G234900 10.0kb downstream 10.0kb downstream 10000   false Chr17: 39011559-39021558 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303094 5265 Fabidae View MSA
124072896 5270 Rosid View MSA
123736483 5271 Pentapetalae View MSA
122789828 5272 Eudicot View MSA
122050042 5273 Angiosperm View MSA
121311703 5274 Embryophyte View MSA
123348966 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.48308 0.0 46.6365   High
cufflinks 5.40631 0.0 68.8991    
cufflinks 6.97015 0.0 52.9896   High
cufflinks 5.69692 0.0 113.84    
cufflinks 2.82837 0.0 52.9116   Low
cufflinks 6.1721 0.0 45.3454    
cufflinks 2.73627 0.0 42.3069   Low
cufflinks 3.74735 0.0 227.126    
cufflinks 4.53445 0.0 65.9216    
cufflinks 0.938        
cufflinks 1.425        
cufflinks 1.384        
cufflinks 0.462       Low
cufflinks 0.321       Low
cufflinks 9.192     High High
cufflinks 3.009        
cufflinks 0.46       Low
cufflinks 1.169        
cufflinks 1.056        
cufflinks 3.999       High
cufflinks 1.189        
cufflinks 2.955        
cufflinks 1.871        
cufflinks 1.653        
cufflinks 3.989       High
cufflinks 1.149        

0 Strain