Gene : Glyma.17G240500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13309 - NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1 Genomic Order:  2405
Name:  ? Glyma.17G240500 Secondary Identifier:  ? PAC:30480255
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G240500 0.5kb upstream 0.5kb upstream 5800   true Chr17: 39604375-39610174 Glycine max
Glyma.17G240500 0.5kb upstream 0.5kb upstream 500   false Chr17: 39609675-39610174 Glycine max
Glyma.17G240500 0.5kb downstream 0.5kb downstream 5800   true Chr17: 39603875-39609674 Glycine max
Glyma.17G240500 0.5kb downstream 0.5kb downstream 500   false Chr17: 39603875-39604374 Glycine max
Glyma.17G240500 1.0kb upstream 1.0kb upstream 6300   true Chr17: 39604375-39610674 Glycine max
Glyma.17G240500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 39609675-39610674 Glycine max
Glyma.17G240500 1.0kb downstream 1.0kb downstream 6300   true Chr17: 39603375-39609674 Glycine max
Glyma.17G240500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 39603375-39604374 Glycine max
Glyma.17G240500 2.0kb upstream 2.0kb upstream 7300   true Chr17: 39604375-39611674 Glycine max
Glyma.17G240500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 39609675-39611674 Glycine max
Glyma.17G240500 2.0kb downstream 2.0kb downstream 7300   true Chr17: 39602375-39609674 Glycine max
Glyma.17G240500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 39602375-39604374 Glycine max
Glyma.17G240500 5.0kb upstream 5.0kb upstream 10300   true Chr17: 39604375-39614674 Glycine max
Glyma.17G240500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 39609675-39614674 Glycine max
Glyma.17G240500 5.0kb downstream 5.0kb downstream 10300   true Chr17: 39599375-39609674 Glycine max
Glyma.17G240500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 39599375-39604374 Glycine max
Glyma.17G240500 10.0kb upstream 10.0kb upstream 15300   true Chr17: 39604375-39619674 Glycine max
Glyma.17G240500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 39609675-39619674 Glycine max
Glyma.17G240500 10.0kb downstream 10.0kb downstream 15300   true Chr17: 39594375-39609674 Glycine max
Glyma.17G240500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 39594375-39604374 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304192 5265 Fabidae View MSA
124063350 5270 Rosid View MSA
123737690 5271 Pentapetalae View MSA
122793852 5272 Eudicot View MSA
122042641 5273 Angiosperm View MSA
121348724 5274 Embryophyte View MSA
123425996 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.10228 0.0 10.0106   Low
cufflinks 3.71357 0.0 13.1071    
cufflinks 1.50883 0.0 6.98202   Low
cufflinks 3.78486 0.0 13.6918    
cufflinks 4.20705 0.0 17.816    
cufflinks 3.21626 0.0 11.8462    
cufflinks 4.69889 0.0 16.0467   High
cufflinks 3.50576 0.0 13.0759    
cufflinks 3.18783 0.0 11.7736    
cufflinks 0.638        
cufflinks 0.206       Low
cufflinks 0.632        
cufflinks 0.979       High
cufflinks 1.384       High
cufflinks 0.34        
cufflinks 0.665        
cufflinks 0.425        
cufflinks 0.7        
cufflinks 1.215       High
cufflinks 0.538        
cufflinks 0.262       Low
cufflinks 0.642        
cufflinks 0.985       High
cufflinks 0.244       Low
cufflinks 0.629        
cufflinks 0.301       Low

0 Strain