Gene : Glyma.18G025800 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR12565//PTHR12565:SF181 - STEROL REGULATORY ELEMENT-BINDING PROTEIN Genomic Order:  258
Name:  ? Glyma.18G025800 Secondary Identifier:  ? PAC:30554344
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G025800 0.5kb upstream 0.5kb upstream 2344 true Chr18: 1921224-1923567 Glycine max
Glyma.18G025800 0.5kb upstream 0.5kb upstream 500 false Chr18: 1923068-1923567 Glycine max
Glyma.18G025800 0.5kb downstream 0.5kb downstream 2344 true Chr18: 1920724-1923067 Glycine max
Glyma.18G025800 0.5kb downstream 0.5kb downstream 500 false Chr18: 1920724-1921223 Glycine max
Glyma.18G025800 1.0kb upstream 1.0kb upstream 2844 true Chr18: 1921224-1924067 Glycine max
Glyma.18G025800 1.0kb upstream 1.0kb upstream 1000 false Chr18: 1923068-1924067 Glycine max
Glyma.18G025800 1.0kb downstream 1.0kb downstream 2844 true Chr18: 1920224-1923067 Glycine max
Glyma.18G025800 1.0kb downstream 1.0kb downstream 1000 false Chr18: 1920224-1921223 Glycine max
Glyma.18G025800 2.0kb upstream 2.0kb upstream 3844 true Chr18: 1921224-1925067 Glycine max
Glyma.18G025800 2.0kb upstream 2.0kb upstream 2000 false Chr18: 1923068-1925067 Glycine max
Glyma.18G025800 2.0kb downstream 2.0kb downstream 3844 true Chr18: 1919224-1923067 Glycine max
Glyma.18G025800 2.0kb downstream 2.0kb downstream 2000 false Chr18: 1919224-1921223 Glycine max
Glyma.18G025800 5.0kb upstream 5.0kb upstream 6844 true Chr18: 1921224-1928067 Glycine max
Glyma.18G025800 5.0kb upstream 5.0kb upstream 5000 false Chr18: 1923068-1928067 Glycine max
Glyma.18G025800 5.0kb downstream 5.0kb downstream 6844 true Chr18: 1916224-1923067 Glycine max
Glyma.18G025800 5.0kb downstream 5.0kb downstream 5000 false Chr18: 1916224-1921223 Glycine max
Glyma.18G025800 10.0kb upstream 10.0kb upstream 11844 true Chr18: 1921224-1933067 Glycine max
Glyma.18G025800 10.0kb upstream 10.0kb upstream 10000 false Chr18: 1923068-1933067 Glycine max
Glyma.18G025800 10.0kb downstream 10.0kb downstream 11844 true Chr18: 1911224-1923067 Glycine max
Glyma.18G025800 10.0kb downstream 10.0kb downstream 10000 false Chr18: 1911224-1921223 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306982 5265 Fabidae View MSA
124063256 5270 Rosid View MSA
123736392 5271 Pentapetalae View MSA
122786016 5272 Eudicot View MSA
122048947 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.33353 0.0 4.71951    
cufflinks 3.3029 0.0 10.5309    
cufflinks 2.52005 0.0 8.29516    
cufflinks 2.58154 0.0 8.50884    
cufflinks 1.50883 0.0 5.28918    
cufflinks 0.888331 0.0 3.23124    
cufflinks 0.0587373 0.0 0.240944 Low Low
cufflinks 19.1843 0.0 51.275   High
cufflinks 1.63287 0.0 5.67063    
cufflinks 11.192     High High
cufflinks 0.083        
cufflinks 2.312        
cufflinks 0.123        
cufflinks 0.01     Low Low
cufflinks 0.267        
cufflinks 1.446        
cufflinks 0.058     Low Low
cufflinks 1.869        
cufflinks 1.852        
cufflinks 1.133        
cufflinks 0.199        
cufflinks 1.172        
cufflinks 1.504        
cufflinks 0.332        
cufflinks 1.13        
cufflinks 0.025     Low Low

0 Strain