Gene : Glyma.18G028400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21649:SF32 - CHLOROPHYLL A-B BINDING PROTEIN CP29.3, CHLOROPLASTIC Genomic Order:  284
Name:  ? Glyma.18G028400 Secondary Identifier:  ? PAC:30558104
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G028400 0.5kb upstream 0.5kb upstream 3423 true Chr18: 2142245-2145667 Glycine max
Glyma.18G028400 0.5kb upstream 0.5kb upstream 500 false Chr18: 2142245-2142744 Glycine max
Glyma.18G028400 0.5kb downstream 0.5kb downstream 3423 true Chr18: 2142745-2146167 Glycine max
Glyma.18G028400 0.5kb downstream 0.5kb downstream 500 false Chr18: 2145668-2146167 Glycine max
Glyma.18G028400 1.0kb upstream 1.0kb upstream 3923 true Chr18: 2141745-2145667 Glycine max
Glyma.18G028400 1.0kb upstream 1.0kb upstream 1000 false Chr18: 2141745-2142744 Glycine max
Glyma.18G028400 1.0kb downstream 1.0kb downstream 3923 true Chr18: 2142745-2146667 Glycine max
Glyma.18G028400 1.0kb downstream 1.0kb downstream 1000 false Chr18: 2145668-2146667 Glycine max
Glyma.18G028400 2.0kb upstream 2.0kb upstream 4923 true Chr18: 2140745-2145667 Glycine max
Glyma.18G028400 2.0kb upstream 2.0kb upstream 2000 false Chr18: 2140745-2142744 Glycine max
Glyma.18G028400 2.0kb downstream 2.0kb downstream 4923 true Chr18: 2142745-2147667 Glycine max
Glyma.18G028400 2.0kb downstream 2.0kb downstream 2000 false Chr18: 2145668-2147667 Glycine max
Glyma.18G028400 5.0kb upstream 5.0kb upstream 7923 true Chr18: 2137745-2145667 Glycine max
Glyma.18G028400 5.0kb upstream 5.0kb upstream 5000 false Chr18: 2137745-2142744 Glycine max
Glyma.18G028400 5.0kb downstream 5.0kb downstream 7923 true Chr18: 2142745-2150667 Glycine max
Glyma.18G028400 5.0kb downstream 5.0kb downstream 5000 false Chr18: 2145668-2150667 Glycine max
Glyma.18G028400 10.0kb upstream 10.0kb upstream 12923 true Chr18: 2132745-2145667 Glycine max
Glyma.18G028400 10.0kb upstream 10.0kb upstream 10000 false Chr18: 2132745-2142744 Glycine max
Glyma.18G028400 10.0kb downstream 10.0kb downstream 12923 true Chr18: 2142745-2155667 Glycine max
Glyma.18G028400 10.0kb downstream 10.0kb downstream 10000 false Chr18: 2145668-2155667 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780059 5273 Angiosperm View MSA
122301220 5265 Fabidae View MSA
124050329 5270 Rosid View MSA
123744936 5271 Pentapetalae View MSA
122771305 5272 Eudicot View MSA
121051692 5274 Embryophyte View MSA
123428168 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.0373 0.0 79.8638 High  
cufflinks 23.1587 0.0 79.782 High  
cufflinks 6.77661 0.0 24.9439    
cufflinks 21.5077 0.0 64.2484 High  
cufflinks 1.3942 0.0 8.20824    
cufflinks 0.540156 0.0 2.6269   Low
cufflinks 28.233 0.0 84.0007 High High
cufflinks 2.46274 0.0 9.18703    
cufflinks 1.82446 0.0 7.36491    
cufflinks 0.119        
cufflinks 0.013     Low Low
cufflinks 2.018        
cufflinks 0.003     Low Low
cufflinks 0.012     Low Low
cufflinks 0.052     Low  
cufflinks 11.243     High High
cufflinks 0.034     Low  
cufflinks 3.615        
cufflinks 1.717        
cufflinks 13.474     High High
cufflinks 0.033     Low  
cufflinks 10.703     High High
cufflinks 6.062        
cufflinks 0.059     Low  
cufflinks 12.72     High High
cufflinks 0.014     Low Low

0 Strain