Gene : Glyma.18G017900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22904:SF358 - CC-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  179
Name:  ? Glyma.18G017900 Secondary Identifier:  ? PAC:30558174
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G017900 0.5kb upstream 0.5kb upstream 3219 true Chr18: 1293415-1296633 Glycine max
Glyma.18G017900 0.5kb upstream 0.5kb upstream 500 false Chr18: 1293415-1293914 Glycine max
Glyma.18G017900 0.5kb downstream 0.5kb downstream 3219 true Chr18: 1293915-1297133 Glycine max
Glyma.18G017900 0.5kb downstream 0.5kb downstream 500 false Chr18: 1296634-1297133 Glycine max
Glyma.18G017900 1.0kb upstream 1.0kb upstream 3719 true Chr18: 1292915-1296633 Glycine max
Glyma.18G017900 1.0kb upstream 1.0kb upstream 1000 false Chr18: 1292915-1293914 Glycine max
Glyma.18G017900 1.0kb downstream 1.0kb downstream 3719 true Chr18: 1293915-1297633 Glycine max
Glyma.18G017900 1.0kb downstream 1.0kb downstream 1000 false Chr18: 1296634-1297633 Glycine max
Glyma.18G017900 2.0kb upstream 2.0kb upstream 4719 true Chr18: 1291915-1296633 Glycine max
Glyma.18G017900 2.0kb upstream 2.0kb upstream 2000 false Chr18: 1291915-1293914 Glycine max
Glyma.18G017900 2.0kb downstream 2.0kb downstream 4719 true Chr18: 1293915-1298633 Glycine max
Glyma.18G017900 2.0kb downstream 2.0kb downstream 2000 false Chr18: 1296634-1298633 Glycine max
Glyma.18G017900 5.0kb upstream 5.0kb upstream 7719 true Chr18: 1288915-1296633 Glycine max
Glyma.18G017900 5.0kb upstream 5.0kb upstream 5000 false Chr18: 1288915-1293914 Glycine max
Glyma.18G017900 5.0kb downstream 5.0kb downstream 7719 true Chr18: 1293915-1301633 Glycine max
Glyma.18G017900 5.0kb downstream 5.0kb downstream 5000 false Chr18: 1296634-1301633 Glycine max
Glyma.18G017900 10.0kb upstream 10.0kb upstream 12719 true Chr18: 1283915-1296633 Glycine max
Glyma.18G017900 10.0kb upstream 10.0kb upstream 10000 false Chr18: 1283915-1293914 Glycine max
Glyma.18G017900 10.0kb downstream 10.0kb downstream 12719 true Chr18: 1293915-1306633 Glycine max
Glyma.18G017900 10.0kb downstream 10.0kb downstream 10000 false Chr18: 1296634-1306633 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304897 5265 Fabidae View MSA
124063288 5270 Rosid View MSA
123737789 5271 Pentapetalae View MSA
122790297 5272 Eudicot View MSA
122047040 5273 Angiosperm View MSA
121310683 5274 Embryophyte View MSA
123348108 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.10398 0.0 9.41333   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.028563 0.0 0.119532 Low  
cufflinks 0.020833 0.0 0.0892802 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.010907 0.0 0.0493647 Low  
cufflinks 0.0332835 0.0 0.137775 Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.578       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  
cufflinks 2.34       High
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain