Gene : Glyma.18G017800 G. max Wm82.a2.v1
Defline:  (1 of 75) PF05678 - VQ motif (VQ) Genomic Order:  178
Name:  ? Glyma.18G017800 Secondary Identifier:  ? PAC:30558461
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G017800 0.5kb upstream 0.5kb upstream 2280 true Chr18: 1285879-1288158 Glycine max
Glyma.18G017800 0.5kb upstream 0.5kb upstream 500 false Chr18: 1287659-1288158 Glycine max
Glyma.18G017800 0.5kb downstream 0.5kb downstream 2280 true Chr18: 1285379-1287658 Glycine max
Glyma.18G017800 0.5kb downstream 0.5kb downstream 500 false Chr18: 1285379-1285878 Glycine max
Glyma.18G017800 1.0kb upstream 1.0kb upstream 2780 true Chr18: 1285879-1288658 Glycine max
Glyma.18G017800 1.0kb upstream 1.0kb upstream 1000 false Chr18: 1287659-1288658 Glycine max
Glyma.18G017800 1.0kb downstream 1.0kb downstream 2780 true Chr18: 1284879-1287658 Glycine max
Glyma.18G017800 1.0kb downstream 1.0kb downstream 1000 false Chr18: 1284879-1285878 Glycine max
Glyma.18G017800 2.0kb upstream 2.0kb upstream 3780 true Chr18: 1285879-1289658 Glycine max
Glyma.18G017800 2.0kb upstream 2.0kb upstream 2000 false Chr18: 1287659-1289658 Glycine max
Glyma.18G017800 2.0kb downstream 2.0kb downstream 3780 true Chr18: 1283879-1287658 Glycine max
Glyma.18G017800 2.0kb downstream 2.0kb downstream 2000 false Chr18: 1283879-1285878 Glycine max
Glyma.18G017800 5.0kb upstream 5.0kb upstream 6780 true Chr18: 1285879-1292658 Glycine max
Glyma.18G017800 5.0kb upstream 5.0kb upstream 5000 false Chr18: 1287659-1292658 Glycine max
Glyma.18G017800 5.0kb downstream 5.0kb downstream 6780 true Chr18: 1280879-1287658 Glycine max
Glyma.18G017800 5.0kb downstream 5.0kb downstream 5000 false Chr18: 1280879-1285878 Glycine max
Glyma.18G017800 10.0kb upstream 10.0kb upstream 11780 true Chr18: 1285879-1297658 Glycine max
Glyma.18G017800 10.0kb upstream 10.0kb upstream 10000 false Chr18: 1287659-1297658 Glycine max
Glyma.18G017800 10.0kb downstream 10.0kb downstream 11780 true Chr18: 1275879-1287658 Glycine max
Glyma.18G017800 10.0kb downstream 10.0kb downstream 10000 false Chr18: 1275879-1285878 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311047 5265 Fabidae View MSA
124069975 5270 Rosid View MSA
123750267 5271 Pentapetalae View MSA
122794981 5272 Eudicot View MSA
122048174 5273 Angiosperm View MSA
121350948 5274 Embryophyte View MSA
123381944 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.7893 0.0 16.7026    
cufflinks 3.75811 0.0 11.4953    
cufflinks 1.01227 0.0 3.6142   Low
cufflinks 4.64923 0.0 13.7757    
cufflinks 5.34674 0.0 15.518    
cufflinks 6.37933 0.0 18.1979    
cufflinks 0.98214 0.0 3.49682   Low
cufflinks 12.4165 0.0 33.4499   High
cufflinks 9.69124 0.0 26.5405    
cufflinks 1.761        
cufflinks 3.789        
cufflinks 1.087        
cufflinks 1.743        
cufflinks 1.496        
cufflinks 10.377     High High
cufflinks 1.072        
cufflinks 8.278     High High
cufflinks 0.793       Low
cufflinks 3.442        
cufflinks 1.0        
cufflinks 6.113     High High
cufflinks 1.086        
cufflinks 1.212        
cufflinks 3.583        
cufflinks 0.805       Low
cufflinks 5.658       High

0 Strain