Gene : Glyma.18G006200 G. max Wm82.a2.v1
Defline:  (1 of 2) 1.14.11.33//4.2.99.18 - DNA oxidative demethylase / Alkylated DNA repair protein // DNA-(apurinic or apyrimidinic site) lyase / Phage-T4 UV endonuclease Genomic Order:  62
Name:  ? Glyma.18G006200 Secondary Identifier:  ? PAC:30555973
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G006200 0.5kb upstream 0.5kb upstream 3286 true Chr18: 454926-458211 Glycine max
Glyma.18G006200 0.5kb upstream 0.5kb upstream 500 false Chr18: 454926-455425 Glycine max
Glyma.18G006200 0.5kb downstream 0.5kb downstream 3286 true Chr18: 455426-458711 Glycine max
Glyma.18G006200 0.5kb downstream 0.5kb downstream 500 false Chr18: 458212-458711 Glycine max
Glyma.18G006200 1.0kb upstream 1.0kb upstream 3786 true Chr18: 454426-458211 Glycine max
Glyma.18G006200 1.0kb upstream 1.0kb upstream 1000 false Chr18: 454426-455425 Glycine max
Glyma.18G006200 1.0kb downstream 1.0kb downstream 3786 true Chr18: 455426-459211 Glycine max
Glyma.18G006200 1.0kb downstream 1.0kb downstream 1000 false Chr18: 458212-459211 Glycine max
Glyma.18G006200 2.0kb upstream 2.0kb upstream 4786 true Chr18: 453426-458211 Glycine max
Glyma.18G006200 2.0kb upstream 2.0kb upstream 2000 false Chr18: 453426-455425 Glycine max
Glyma.18G006200 2.0kb downstream 2.0kb downstream 4786 true Chr18: 455426-460211 Glycine max
Glyma.18G006200 2.0kb downstream 2.0kb downstream 2000 false Chr18: 458212-460211 Glycine max
Glyma.18G006200 5.0kb upstream 5.0kb upstream 7786 true Chr18: 450426-458211 Glycine max
Glyma.18G006200 5.0kb upstream 5.0kb upstream 5000 false Chr18: 450426-455425 Glycine max
Glyma.18G006200 5.0kb downstream 5.0kb downstream 7786 true Chr18: 455426-463211 Glycine max
Glyma.18G006200 5.0kb downstream 5.0kb downstream 5000 false Chr18: 458212-463211 Glycine max
Glyma.18G006200 10.0kb upstream 10.0kb upstream 12786 true Chr18: 445426-458211 Glycine max
Glyma.18G006200 10.0kb upstream 10.0kb upstream 10000 false Chr18: 445426-455425 Glycine max
Glyma.18G006200 10.0kb downstream 10.0kb downstream 12786 true Chr18: 455426-468211 Glycine max
Glyma.18G006200 10.0kb downstream 10.0kb downstream 10000 false Chr18: 458212-468211 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301294 5265 Fabidae View MSA
124069027 5270 Rosid View MSA
123737272 5271 Pentapetalae View MSA
122785941 5272 Eudicot View MSA
122044879 5273 Angiosperm View MSA
121344923 5274 Embryophyte View MSA
123425704 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.86206 0.0 9.28323   Low
cufflinks 3.15056 0.0 10.0692    
cufflinks 2.59485 0.0 8.49279   Low
cufflinks 3.8836 0.0 12.028    
cufflinks 4.63969 0.0 14.045    
cufflinks 5.20619 0.0 15.4778    
cufflinks 5.77334 0.0 16.9732   High
cufflinks 4.25882 0.0 13.0208    
cufflinks 5.13633 0.0 15.3191    
cufflinks 1.868        
cufflinks 1.002       Low
cufflinks 1.899        
cufflinks 3.211       High
cufflinks 5.199       High
cufflinks 0.81       Low
cufflinks 1.724        
cufflinks 0.931       Low
cufflinks 2.082        
cufflinks 1.579        
cufflinks 1.819        
cufflinks 1.364        
cufflinks 1.663        
cufflinks 2.052        
cufflinks 1.301        
cufflinks 1.699        
cufflinks 1.33        

0 Strain