Gene : Glyma.18G011700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13164:SF7 - COP1-INTERACTING PROTEIN 4-RELATED Genomic Order:  117
Name:  ? Glyma.18G011700 Secondary Identifier:  ? PAC:30558229
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G011700 0.5kb upstream 0.5kb upstream 6704 true Chr18: 823020-829723 Glycine max
Glyma.18G011700 0.5kb upstream 0.5kb upstream 500 false Chr18: 823020-823519 Glycine max
Glyma.18G011700 0.5kb downstream 0.5kb downstream 6704 true Chr18: 823520-830223 Glycine max
Glyma.18G011700 0.5kb downstream 0.5kb downstream 500 false Chr18: 829724-830223 Glycine max
Glyma.18G011700 1.0kb upstream 1.0kb upstream 7204 true Chr18: 822520-829723 Glycine max
Glyma.18G011700 1.0kb upstream 1.0kb upstream 1000 false Chr18: 822520-823519 Glycine max
Glyma.18G011700 1.0kb downstream 1.0kb downstream 7204 true Chr18: 823520-830723 Glycine max
Glyma.18G011700 1.0kb downstream 1.0kb downstream 1000 false Chr18: 829724-830723 Glycine max
Glyma.18G011700 2.0kb upstream 2.0kb upstream 8204 true Chr18: 821520-829723 Glycine max
Glyma.18G011700 2.0kb upstream 2.0kb upstream 2000 false Chr18: 821520-823519 Glycine max
Glyma.18G011700 2.0kb downstream 2.0kb downstream 8204 true Chr18: 823520-831723 Glycine max
Glyma.18G011700 2.0kb downstream 2.0kb downstream 2000 false Chr18: 829724-831723 Glycine max
Glyma.18G011700 5.0kb upstream 5.0kb upstream 11204 true Chr18: 818520-829723 Glycine max
Glyma.18G011700 5.0kb upstream 5.0kb upstream 5000 false Chr18: 818520-823519 Glycine max
Glyma.18G011700 5.0kb downstream 5.0kb downstream 11204 true Chr18: 823520-834723 Glycine max
Glyma.18G011700 5.0kb downstream 5.0kb downstream 5000 false Chr18: 829724-834723 Glycine max
Glyma.18G011700 10.0kb upstream 10.0kb upstream 16204 true Chr18: 813520-829723 Glycine max
Glyma.18G011700 10.0kb upstream 10.0kb upstream 10000 false Chr18: 813520-823519 Glycine max
Glyma.18G011700 10.0kb downstream 10.0kb downstream 16204 true Chr18: 823520-839723 Glycine max
Glyma.18G011700 10.0kb downstream 10.0kb downstream 10000 false Chr18: 829724-839723 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299394 5265 Fabidae View MSA
124069381 5270 Rosid View MSA
123743976 5271 Pentapetalae View MSA
122793189 5272 Eudicot View MSA
122042859 5273 Angiosperm View MSA
121310036 5274 Embryophyte View MSA
123347639 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.26864 0.0 6.46888    
cufflinks 2.63885 0.0 7.39781    
cufflinks 1.51276 0.0 4.51527    
cufflinks 2.11946 0.0 6.07067    
cufflinks 1.75825 0.0 5.1886    
cufflinks 0.744577 0.0 2.47367   Low
cufflinks 2.67003 0.0 7.50069    
cufflinks 1.81376 0.0 5.30521    
cufflinks 2.11419 0.0 6.08337    
cufflinks 1.148        
cufflinks 1.675        
cufflinks 2.704       High
cufflinks 1.824        
cufflinks 2.256        
cufflinks 2.785       High
cufflinks 1.558        
cufflinks 0.535       Low
cufflinks 2.793       High
cufflinks 2.263        
cufflinks 1.288        
cufflinks 2.245        
cufflinks 1.519        
cufflinks 1.907        
cufflinks 0.938       Low
cufflinks 1.476        
cufflinks 1.235        

0 Strain