Gene : Glyma.18G053900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23249:SF15 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 4 Genomic Order:  539
Name:  ? Glyma.18G053900 Secondary Identifier:  ? PAC:30557696
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G053900 0.5kb upstream 0.5kb upstream 3312 true Chr18: 4671216-4674527 Glycine max
Glyma.18G053900 0.5kb upstream 0.5kb upstream 500 false Chr18: 4671216-4671715 Glycine max
Glyma.18G053900 0.5kb downstream 0.5kb downstream 3312 true Chr18: 4671716-4675027 Glycine max
Glyma.18G053900 0.5kb downstream 0.5kb downstream 500 false Chr18: 4674528-4675027 Glycine max
Glyma.18G053900 1.0kb upstream 1.0kb upstream 3812 true Chr18: 4670716-4674527 Glycine max
Glyma.18G053900 1.0kb upstream 1.0kb upstream 1000 false Chr18: 4670716-4671715 Glycine max
Glyma.18G053900 1.0kb downstream 1.0kb downstream 3812 true Chr18: 4671716-4675527 Glycine max
Glyma.18G053900 1.0kb downstream 1.0kb downstream 1000 false Chr18: 4674528-4675527 Glycine max
Glyma.18G053900 2.0kb upstream 2.0kb upstream 4812 true Chr18: 4669716-4674527 Glycine max
Glyma.18G053900 2.0kb upstream 2.0kb upstream 2000 false Chr18: 4669716-4671715 Glycine max
Glyma.18G053900 2.0kb downstream 2.0kb downstream 4812 true Chr18: 4671716-4676527 Glycine max
Glyma.18G053900 2.0kb downstream 2.0kb downstream 2000 false Chr18: 4674528-4676527 Glycine max
Glyma.18G053900 5.0kb upstream 5.0kb upstream 7812 true Chr18: 4666716-4674527 Glycine max
Glyma.18G053900 5.0kb upstream 5.0kb upstream 5000 false Chr18: 4666716-4671715 Glycine max
Glyma.18G053900 5.0kb downstream 5.0kb downstream 7812 true Chr18: 4671716-4679527 Glycine max
Glyma.18G053900 5.0kb downstream 5.0kb downstream 5000 false Chr18: 4674528-4679527 Glycine max
Glyma.18G053900 10.0kb upstream 10.0kb upstream 12812 true Chr18: 4661716-4674527 Glycine max
Glyma.18G053900 10.0kb upstream 10.0kb upstream 10000 false Chr18: 4661716-4671715 Glycine max
Glyma.18G053900 10.0kb downstream 10.0kb downstream 12812 true Chr18: 4671716-4684527 Glycine max
Glyma.18G053900 10.0kb downstream 10.0kb downstream 10000 false Chr18: 4674528-4684527 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312877 5265 Fabidae View MSA
124062773 5270 Rosid View MSA
123740967 5271 Pentapetalae View MSA
122786625 5272 Eudicot View MSA
122043161 5273 Angiosperm View MSA
121347078 5274 Embryophyte View MSA
123424121 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.93176 0.0 13.2375   Low
cufflinks 7.39923 0.0 22.8299    
cufflinks 7.39002 0.0 22.6823    
cufflinks 11.3958 0.0 33.0127    
cufflinks 10.5221 0.0 30.8671    
cufflinks 15.1051 0.0 42.4908    
cufflinks 6.90937 0.0 21.5289    
cufflinks 10.7758 0.0 31.4707    
cufflinks 20.8428 0.0 56.9471 High High
cufflinks 3.401        
cufflinks 2.419        
cufflinks 2.387        
cufflinks 3.148        
cufflinks 3.271        
cufflinks 5.44     High High
cufflinks 1.938        
cufflinks 1.411       Low
cufflinks 3.294        
cufflinks 2.524        
cufflinks 1.737       Low
cufflinks 3.009        
cufflinks 1.793        
cufflinks 1.871        
cufflinks 2.263        
cufflinks 1.82        
cufflinks 2.241        

0 Strain