Gene : Glyma.18G058600 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR31165:SF6 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 Genomic Order:  586
Name:  ? Glyma.18G058600 Secondary Identifier:  ? PAC:30556453
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G058600 0.5kb upstream 0.5kb upstream 4175 true Chr18: 5163076-5167250 Glycine max
Glyma.18G058600 0.5kb upstream 0.5kb upstream 500 false Chr18: 5166751-5167250 Glycine max
Glyma.18G058600 0.5kb downstream 0.5kb downstream 4175 true Chr18: 5162576-5166750 Glycine max
Glyma.18G058600 0.5kb downstream 0.5kb downstream 500 false Chr18: 5162576-5163075 Glycine max
Glyma.18G058600 1.0kb upstream 1.0kb upstream 4675 true Chr18: 5163076-5167750 Glycine max
Glyma.18G058600 1.0kb upstream 1.0kb upstream 1000 false Chr18: 5166751-5167750 Glycine max
Glyma.18G058600 1.0kb downstream 1.0kb downstream 4675 true Chr18: 5162076-5166750 Glycine max
Glyma.18G058600 1.0kb downstream 1.0kb downstream 1000 false Chr18: 5162076-5163075 Glycine max
Glyma.18G058600 2.0kb upstream 2.0kb upstream 5675 true Chr18: 5163076-5168750 Glycine max
Glyma.18G058600 2.0kb upstream 2.0kb upstream 2000 false Chr18: 5166751-5168750 Glycine max
Glyma.18G058600 2.0kb downstream 2.0kb downstream 5675 true Chr18: 5161076-5166750 Glycine max
Glyma.18G058600 2.0kb downstream 2.0kb downstream 2000 false Chr18: 5161076-5163075 Glycine max
Glyma.18G058600 5.0kb upstream 5.0kb upstream 8675 true Chr18: 5163076-5171750 Glycine max
Glyma.18G058600 5.0kb upstream 5.0kb upstream 5000 false Chr18: 5166751-5171750 Glycine max
Glyma.18G058600 5.0kb downstream 5.0kb downstream 8675 true Chr18: 5158076-5166750 Glycine max
Glyma.18G058600 5.0kb downstream 5.0kb downstream 5000 false Chr18: 5158076-5163075 Glycine max
Glyma.18G058600 10.0kb upstream 10.0kb upstream 13675 true Chr18: 5163076-5176750 Glycine max
Glyma.18G058600 10.0kb upstream 10.0kb upstream 10000 false Chr18: 5166751-5176750 Glycine max
Glyma.18G058600 10.0kb downstream 10.0kb downstream 13675 true Chr18: 5153076-5166750 Glycine max
Glyma.18G058600 10.0kb downstream 10.0kb downstream 10000 false Chr18: 5153076-5163075 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310216 5265 Fabidae View MSA
124067272 5270 Rosid View MSA
123741885 5271 Pentapetalae View MSA
122789357 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.01099 0.0 9.55697    
cufflinks 1.95839 0.0 6.60642   Low
cufflinks 4.83862 0.0 14.4352    
cufflinks 8.33413 0.0 23.219   High
cufflinks 5.26664 0.0 15.401    
cufflinks 3.59995 0.0 11.1354    
cufflinks 7.15385 0.0 20.161    
cufflinks 7.05991 0.0 19.9965    
cufflinks 4.9399 0.0 14.6203    
cufflinks 1.243       High
cufflinks 0.365        
cufflinks 2.393       High
cufflinks 1.002        
cufflinks 0.194       Low
cufflinks 0.206       Low
cufflinks 0.352        
cufflinks 0.271        
cufflinks 1.638       High
cufflinks 0.732        
cufflinks 0.229        
cufflinks 0.572        
cufflinks 0.236        
cufflinks 0.306        
cufflinks 0.616        
cufflinks 0.26        
cufflinks 0.477        

0 Strain