Gene : Glyma.18G043600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11999//PTHR11999:SF92 - GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE Genomic Order:  436
Name:  ? Glyma.18G043600 Secondary Identifier:  ? PAC:30556180
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLUDEG-I-PWY Glycine max pathologic  
Gmax PWY0-1305 Glycine max pathologic  
Gmax PWY-4321 Glycine max pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G043600 0.5kb upstream 0.5kb upstream 11367 true Chr18: 3716146-3727512 Glycine max
Glyma.18G043600 0.5kb upstream 0.5kb upstream 500 false Chr18: 3727013-3727512 Glycine max
Glyma.18G043600 0.5kb downstream 0.5kb downstream 11367 true Chr18: 3715646-3727012 Glycine max
Glyma.18G043600 0.5kb downstream 0.5kb downstream 500 false Chr18: 3715646-3716145 Glycine max
Glyma.18G043600 1.0kb upstream 1.0kb upstream 11867 true Chr18: 3716146-3728012 Glycine max
Glyma.18G043600 1.0kb upstream 1.0kb upstream 1000 false Chr18: 3727013-3728012 Glycine max
Glyma.18G043600 1.0kb downstream 1.0kb downstream 11867 true Chr18: 3715146-3727012 Glycine max
Glyma.18G043600 1.0kb downstream 1.0kb downstream 1000 false Chr18: 3715146-3716145 Glycine max
Glyma.18G043600 2.0kb upstream 2.0kb upstream 12867 true Chr18: 3716146-3729012 Glycine max
Glyma.18G043600 2.0kb upstream 2.0kb upstream 2000 false Chr18: 3727013-3729012 Glycine max
Glyma.18G043600 2.0kb downstream 2.0kb downstream 12867 true Chr18: 3714146-3727012 Glycine max
Glyma.18G043600 2.0kb downstream 2.0kb downstream 2000 false Chr18: 3714146-3716145 Glycine max
Glyma.18G043600 5.0kb upstream 5.0kb upstream 15867 true Chr18: 3716146-3732012 Glycine max
Glyma.18G043600 5.0kb upstream 5.0kb upstream 5000 false Chr18: 3727013-3732012 Glycine max
Glyma.18G043600 5.0kb downstream 5.0kb downstream 15867 true Chr18: 3711146-3727012 Glycine max
Glyma.18G043600 5.0kb downstream 5.0kb downstream 5000 false Chr18: 3711146-3716145 Glycine max
Glyma.18G043600 10.0kb upstream 10.0kb upstream 20867 true Chr18: 3716146-3737012 Glycine max
Glyma.18G043600 10.0kb upstream 10.0kb upstream 10000 false Chr18: 3727013-3737012 Glycine max
Glyma.18G043600 10.0kb downstream 10.0kb downstream 20867 true Chr18: 3706146-3727012 Glycine max
Glyma.18G043600 10.0kb downstream 10.0kb downstream 10000 false Chr18: 3706146-3716145 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309616 5265 Fabidae View MSA
124073926 5270 Rosid View MSA
123749296 5271 Pentapetalae View MSA
122788993 5272 Eudicot View MSA
122047192 5273 Angiosperm View MSA
121350824 5274 Embryophyte View MSA
123427084 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 129.584 0.0 443.971 High  
cufflinks 40.6328 0.0 114.403 High  
cufflinks 470.946 0.0 2466.14 High High
cufflinks 94.7483 0.0 304.121 High  
cufflinks 21.6116 0.0 58.0776 High  
cufflinks 13.9194 0.0 37.1447   Low
cufflinks 53.9293 0.0 157.621 High  
cufflinks 89.6185 0.0 285.207 High  
cufflinks 16.1812 0.0 43.1861   Low
cufflinks 16.531     High  
cufflinks 0.934       Low
cufflinks 46.828     High High
cufflinks 16.869     High  
cufflinks 10.579     High  
cufflinks 0.198       Low
cufflinks 18.593     High  
cufflinks 8.246     High  
cufflinks 35.85     High  
cufflinks 4.886        
cufflinks 35.439     High  
cufflinks 2.684        
cufflinks 28.969     High  
cufflinks 32.896     High  
cufflinks 1.531       Low
cufflinks 22.6     High  
cufflinks 3.891        

0 Strain