Gene : Glyma.18G048200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR22904:SF373 - PROTEIN TIC 40, CHLOROPLASTIC Genomic Order:  482
Name:  ? Glyma.18G048200 Secondary Identifier:  ? PAC:30555342
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G048200 0.5kb upstream 0.5kb upstream 8926 true Chr18: 4165713-4174638 Glycine max
Glyma.18G048200 0.5kb upstream 0.5kb upstream 500 false Chr18: 4174139-4174638 Glycine max
Glyma.18G048200 0.5kb downstream 0.5kb downstream 8926 true Chr18: 4165213-4174138 Glycine max
Glyma.18G048200 0.5kb downstream 0.5kb downstream 500 false Chr18: 4165213-4165712 Glycine max
Glyma.18G048200 1.0kb upstream 1.0kb upstream 9426 true Chr18: 4165713-4175138 Glycine max
Glyma.18G048200 1.0kb upstream 1.0kb upstream 1000 false Chr18: 4174139-4175138 Glycine max
Glyma.18G048200 1.0kb downstream 1.0kb downstream 9426 true Chr18: 4164713-4174138 Glycine max
Glyma.18G048200 1.0kb downstream 1.0kb downstream 1000 false Chr18: 4164713-4165712 Glycine max
Glyma.18G048200 2.0kb upstream 2.0kb upstream 10426 true Chr18: 4165713-4176138 Glycine max
Glyma.18G048200 2.0kb upstream 2.0kb upstream 2000 false Chr18: 4174139-4176138 Glycine max
Glyma.18G048200 2.0kb downstream 2.0kb downstream 10426 true Chr18: 4163713-4174138 Glycine max
Glyma.18G048200 2.0kb downstream 2.0kb downstream 2000 false Chr18: 4163713-4165712 Glycine max
Glyma.18G048200 5.0kb upstream 5.0kb upstream 13426 true Chr18: 4165713-4179138 Glycine max
Glyma.18G048200 5.0kb upstream 5.0kb upstream 5000 false Chr18: 4174139-4179138 Glycine max
Glyma.18G048200 5.0kb downstream 5.0kb downstream 13426 true Chr18: 4160713-4174138 Glycine max
Glyma.18G048200 5.0kb downstream 5.0kb downstream 5000 false Chr18: 4160713-4165712 Glycine max
Glyma.18G048200 10.0kb upstream 10.0kb upstream 18426 true Chr18: 4165713-4184138 Glycine max
Glyma.18G048200 10.0kb upstream 10.0kb upstream 10000 false Chr18: 4174139-4184138 Glycine max
Glyma.18G048200 10.0kb downstream 10.0kb downstream 18426 true Chr18: 4155713-4174138 Glycine max
Glyma.18G048200 10.0kb downstream 10.0kb downstream 10000 false Chr18: 4155713-4165712 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306461 5265 Fabidae View MSA
124060602 5270 Rosid View MSA
123738700 5271 Pentapetalae View MSA
122785851 5272 Eudicot View MSA
122043574 5273 Angiosperm View MSA
121344558 5274 Embryophyte View MSA
123424576 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.8237 0.0 122.392 High High
cufflinks 18.8432 0.0 56.7557    
cufflinks 16.3015 0.0 48.7619    
cufflinks 14.7386 0.0 43.8306    
cufflinks 14.3818 0.0 42.7063    
cufflinks 14.4739 0.0 43.0435    
cufflinks 17.3826 0.0 51.9957    
cufflinks 14.1644 0.0 42.0569    
cufflinks 13.7602 0.0 41.1226    
cufflinks 3.824        
cufflinks 3.24        
cufflinks 3.364        
cufflinks 3.59        
cufflinks 3.311        
cufflinks 2.215       Low
cufflinks 5.954       High
cufflinks 3.452        
cufflinks 2.887        
cufflinks 4.836        
cufflinks 6.326       High
cufflinks 3.211        
cufflinks 6.355       High
cufflinks 6.361       High
cufflinks 3.53        
cufflinks 5.932       High
cufflinks 2.824       Low

0 Strain