Gene : Glyma.18G028500 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR13848:SF5 - PROTEIN YIPPEE-LIKE Genomic Order:  285
Name:  ? Glyma.18G028500 Secondary Identifier:  ? PAC:30554613
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G028500 0.5kb upstream 0.5kb upstream 3828 true Chr18: 2148706-2152533 Glycine max
Glyma.18G028500 0.5kb upstream 0.5kb upstream 500 false Chr18: 2148706-2149205 Glycine max
Glyma.18G028500 0.5kb downstream 0.5kb downstream 3828 true Chr18: 2149206-2153033 Glycine max
Glyma.18G028500 0.5kb downstream 0.5kb downstream 500 false Chr18: 2152534-2153033 Glycine max
Glyma.18G028500 1.0kb upstream 1.0kb upstream 4328 true Chr18: 2148206-2152533 Glycine max
Glyma.18G028500 1.0kb upstream 1.0kb upstream 1000 false Chr18: 2148206-2149205 Glycine max
Glyma.18G028500 1.0kb downstream 1.0kb downstream 4328 true Chr18: 2149206-2153533 Glycine max
Glyma.18G028500 1.0kb downstream 1.0kb downstream 1000 false Chr18: 2152534-2153533 Glycine max
Glyma.18G028500 2.0kb upstream 2.0kb upstream 5328 true Chr18: 2147206-2152533 Glycine max
Glyma.18G028500 2.0kb upstream 2.0kb upstream 2000 false Chr18: 2147206-2149205 Glycine max
Glyma.18G028500 2.0kb downstream 2.0kb downstream 5328 true Chr18: 2149206-2154533 Glycine max
Glyma.18G028500 2.0kb downstream 2.0kb downstream 2000 false Chr18: 2152534-2154533 Glycine max
Glyma.18G028500 5.0kb upstream 5.0kb upstream 8328 true Chr18: 2144206-2152533 Glycine max
Glyma.18G028500 5.0kb upstream 5.0kb upstream 5000 false Chr18: 2144206-2149205 Glycine max
Glyma.18G028500 5.0kb downstream 5.0kb downstream 8328 true Chr18: 2149206-2157533 Glycine max
Glyma.18G028500 5.0kb downstream 5.0kb downstream 5000 false Chr18: 2152534-2157533 Glycine max
Glyma.18G028500 10.0kb upstream 10.0kb upstream 13328 true Chr18: 2139206-2152533 Glycine max
Glyma.18G028500 10.0kb upstream 10.0kb upstream 10000 false Chr18: 2139206-2149205 Glycine max
Glyma.18G028500 10.0kb downstream 10.0kb downstream 13328 true Chr18: 2149206-2162533 Glycine max
Glyma.18G028500 10.0kb downstream 10.0kb downstream 10000 false Chr18: 2152534-2162533 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309707 5265 Fabidae View MSA
124065020 5270 Rosid View MSA
123748773 5271 Pentapetalae View MSA
122791142 5272 Eudicot View MSA
122047992 5273 Angiosperm View MSA
123428914 5275 Viridiplantae View MSA
121350900 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.0054 0.0 157.749 High  
cufflinks 39.659 0.0 135.594 High  
cufflinks 41.9139 0.0 143.48 High  
cufflinks 39.243 0.0 134.154 High  
cufflinks 37.2023 0.0 127.379 High  
cufflinks 77.4494 0.0 280.511 High High
cufflinks 17.8097 0.0 56.9579   Low
cufflinks 52.0181 0.0 180.444 High  
cufflinks 53.1581 0.0 183.87 High  
cufflinks 3.234        
cufflinks 3.078        
cufflinks 4.09        
cufflinks 3.15        
cufflinks 2.123       Low
cufflinks 1.56       Low
cufflinks 3.612        
cufflinks 3.657        
cufflinks 4.919       High
cufflinks 3.495        
cufflinks 3.416        
cufflinks 3.477        
cufflinks 3.546        
cufflinks 3.706        
cufflinks 4.996       High
cufflinks 4.052        
cufflinks 4.036        

0 Strain