Gene : Glyma.18G075900 G. max Wm82.a2.v1
Defline:  (1 of 25) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  759
Name:  ? Glyma.18G075900 Secondary Identifier:  ? PAC:30554901
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G075900 0.5kb upstream 0.5kb upstream 3850 true Chr18: 7195465-7199314 Glycine max
Glyma.18G075900 0.5kb upstream 0.5kb upstream 500 false Chr18: 7198815-7199314 Glycine max
Glyma.18G075900 0.5kb downstream 0.5kb downstream 3850 true Chr18: 7194965-7198814 Glycine max
Glyma.18G075900 0.5kb downstream 0.5kb downstream 500 false Chr18: 7194965-7195464 Glycine max
Glyma.18G075900 1.0kb upstream 1.0kb upstream 4350 true Chr18: 7195465-7199814 Glycine max
Glyma.18G075900 1.0kb upstream 1.0kb upstream 1000 false Chr18: 7198815-7199814 Glycine max
Glyma.18G075900 1.0kb downstream 1.0kb downstream 4350 true Chr18: 7194465-7198814 Glycine max
Glyma.18G075900 1.0kb downstream 1.0kb downstream 1000 false Chr18: 7194465-7195464 Glycine max
Glyma.18G075900 2.0kb upstream 2.0kb upstream 5350 true Chr18: 7195465-7200814 Glycine max
Glyma.18G075900 2.0kb upstream 2.0kb upstream 2000 false Chr18: 7198815-7200814 Glycine max
Glyma.18G075900 2.0kb downstream 2.0kb downstream 5350 true Chr18: 7193465-7198814 Glycine max
Glyma.18G075900 2.0kb downstream 2.0kb downstream 2000 false Chr18: 7193465-7195464 Glycine max
Glyma.18G075900 5.0kb upstream 5.0kb upstream 8350 true Chr18: 7195465-7203814 Glycine max
Glyma.18G075900 5.0kb upstream 5.0kb upstream 5000 false Chr18: 7198815-7203814 Glycine max
Glyma.18G075900 5.0kb downstream 5.0kb downstream 8350 true Chr18: 7190465-7198814 Glycine max
Glyma.18G075900 5.0kb downstream 5.0kb downstream 5000 false Chr18: 7190465-7195464 Glycine max
Glyma.18G075900 10.0kb upstream 10.0kb upstream 13350 true Chr18: 7195465-7208814 Glycine max
Glyma.18G075900 10.0kb upstream 10.0kb upstream 10000 false Chr18: 7198815-7208814 Glycine max
Glyma.18G075900 10.0kb downstream 10.0kb downstream 13350 true Chr18: 7185465-7198814 Glycine max
Glyma.18G075900 10.0kb downstream 10.0kb downstream 10000 false Chr18: 7185465-7195464 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312019 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 60.3919 0.0 162.1 High  
cufflinks 40.1782 0.0 107.202 High Low
cufflinks 61.8952 0.0 166.496 High  
cufflinks 80.5408 0.0 219.868 High  
cufflinks 71.8866 0.0 194.478 High  
cufflinks 129.74 0.0 370.553 High High
cufflinks 59.304 0.0 158.982 High  
cufflinks 97.9293 0.0 271.76 High  
cufflinks 74.062 0.0 200.958 High  
cufflinks 21.305     High High
cufflinks 22.959     High High
cufflinks 10.456     High  
cufflinks 20.401     High  
cufflinks 16.201     High  
cufflinks 11.85     High  
cufflinks 8.976     High  
cufflinks 20.687     High High
cufflinks 11.635     High  
cufflinks 8.786     High  
cufflinks 7.726     High Low
cufflinks 17.905     High  
cufflinks 8.692     High  
cufflinks 7.286       Low
cufflinks 24.039     High High
cufflinks 7.216     High Low
cufflinks 19.38     High  

0 Strain