Gene : Glyma.18G080000 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR23416:SF56 - SERINE ACETYLTRANSFERASE 1, CHLOROPLASTIC-RELATED Genomic Order:  800
Name:  ? Glyma.18G080000 Secondary Identifier:  ? PAC:30554673
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CYSTSYN-PWY Glycine max pathologic  
Gmax PWY-6936 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G080000 0.5kb upstream 0.5kb upstream 2074 true Chr18: 7664251-7666324 Glycine max
Glyma.18G080000 0.5kb upstream 0.5kb upstream 500 false Chr18: 7664251-7664750 Glycine max
Glyma.18G080000 0.5kb downstream 0.5kb downstream 2074 true Chr18: 7664751-7666824 Glycine max
Glyma.18G080000 0.5kb downstream 0.5kb downstream 500 false Chr18: 7666325-7666824 Glycine max
Glyma.18G080000 1.0kb upstream 1.0kb upstream 2574 true Chr18: 7663751-7666324 Glycine max
Glyma.18G080000 1.0kb upstream 1.0kb upstream 1000 false Chr18: 7663751-7664750 Glycine max
Glyma.18G080000 1.0kb downstream 1.0kb downstream 2574 true Chr18: 7664751-7667324 Glycine max
Glyma.18G080000 1.0kb downstream 1.0kb downstream 1000 false Chr18: 7666325-7667324 Glycine max
Glyma.18G080000 2.0kb upstream 2.0kb upstream 3574 true Chr18: 7662751-7666324 Glycine max
Glyma.18G080000 2.0kb upstream 2.0kb upstream 2000 false Chr18: 7662751-7664750 Glycine max
Glyma.18G080000 2.0kb downstream 2.0kb downstream 3574 true Chr18: 7664751-7668324 Glycine max
Glyma.18G080000 2.0kb downstream 2.0kb downstream 2000 false Chr18: 7666325-7668324 Glycine max
Glyma.18G080000 5.0kb upstream 5.0kb upstream 6574 true Chr18: 7659751-7666324 Glycine max
Glyma.18G080000 5.0kb upstream 5.0kb upstream 5000 false Chr18: 7659751-7664750 Glycine max
Glyma.18G080000 5.0kb downstream 5.0kb downstream 6574 true Chr18: 7664751-7671324 Glycine max
Glyma.18G080000 5.0kb downstream 5.0kb downstream 5000 false Chr18: 7666325-7671324 Glycine max
Glyma.18G080000 10.0kb upstream 10.0kb upstream 11574 true Chr18: 7654751-7666324 Glycine max
Glyma.18G080000 10.0kb upstream 10.0kb upstream 10000 false Chr18: 7654751-7664750 Glycine max
Glyma.18G080000 10.0kb downstream 10.0kb downstream 11574 true Chr18: 7664751-7676324 Glycine max
Glyma.18G080000 10.0kb downstream 10.0kb downstream 10000 false Chr18: 7666325-7676324 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300401 5265 Fabidae View MSA
124069334 5270 Rosid View MSA
123751427 5271 Pentapetalae View MSA
122788280 5272 Eudicot View MSA
122045055 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.6867 0.0 88.0159 High  
cufflinks 3.87065 0.0 11.8771   Low
cufflinks 127.962 0.0 409.384 High High
cufflinks 29.0613 0.0 77.935 High  
cufflinks 20.3703 0.0 54.3538 High  
cufflinks 27.6965 0.0 74.1565 High  
cufflinks 14.5321 0.0 39.0222    
cufflinks 6.5607 0.0 18.7367   Low
cufflinks 38.6472 0.0 105.162 High  
cufflinks 6.802       Low
cufflinks 100.685     High High
cufflinks 69.041     High  
cufflinks 32.906     High  
cufflinks 30.032     High  
cufflinks 52.137     High  
cufflinks 9.885     High  
cufflinks 86.657     High High
cufflinks 15.104     High  
cufflinks 5.765       Low
cufflinks 6.324       Low
cufflinks 77.383     High  
cufflinks 8.524     High  
cufflinks 4.779       Low
cufflinks 121.266     High High
cufflinks 7.5     High  
cufflinks 85.075     High High

0 Strain