Gene : Glyma.18G075000 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR22807:SF30 - RIBOSOMAL RNA METHYLTRANSFERASE NOP2-RELATED Genomic Order:  750
Name:  ? Glyma.18G075000 Secondary Identifier:  ? PAC:30558648
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G075000 0.5kb upstream 0.5kb upstream 6966 true Chr18: 7105964-7112929 Glycine max
Glyma.18G075000 0.5kb upstream 0.5kb upstream 500 false Chr18: 7105964-7106463 Glycine max
Glyma.18G075000 0.5kb downstream 0.5kb downstream 6966 true Chr18: 7106464-7113429 Glycine max
Glyma.18G075000 0.5kb downstream 0.5kb downstream 500 false Chr18: 7112930-7113429 Glycine max
Glyma.18G075000 1.0kb upstream 1.0kb upstream 7466 true Chr18: 7105464-7112929 Glycine max
Glyma.18G075000 1.0kb upstream 1.0kb upstream 1000 false Chr18: 7105464-7106463 Glycine max
Glyma.18G075000 1.0kb downstream 1.0kb downstream 7466 true Chr18: 7106464-7113929 Glycine max
Glyma.18G075000 1.0kb downstream 1.0kb downstream 1000 false Chr18: 7112930-7113929 Glycine max
Glyma.18G075000 2.0kb upstream 2.0kb upstream 8466 true Chr18: 7104464-7112929 Glycine max
Glyma.18G075000 2.0kb upstream 2.0kb upstream 2000 false Chr18: 7104464-7106463 Glycine max
Glyma.18G075000 2.0kb downstream 2.0kb downstream 8466 true Chr18: 7106464-7114929 Glycine max
Glyma.18G075000 2.0kb downstream 2.0kb downstream 2000 false Chr18: 7112930-7114929 Glycine max
Glyma.18G075000 5.0kb upstream 5.0kb upstream 11466 true Chr18: 7101464-7112929 Glycine max
Glyma.18G075000 5.0kb upstream 5.0kb upstream 5000 false Chr18: 7101464-7106463 Glycine max
Glyma.18G075000 5.0kb downstream 5.0kb downstream 11466 true Chr18: 7106464-7117929 Glycine max
Glyma.18G075000 5.0kb downstream 5.0kb downstream 5000 false Chr18: 7112930-7117929 Glycine max
Glyma.18G075000 10.0kb upstream 10.0kb upstream 16466 true Chr18: 7096464-7112929 Glycine max
Glyma.18G075000 10.0kb upstream 10.0kb upstream 10000 false Chr18: 7096464-7106463 Glycine max
Glyma.18G075000 10.0kb downstream 10.0kb downstream 16466 true Chr18: 7106464-7122929 Glycine max
Glyma.18G075000 10.0kb downstream 10.0kb downstream 10000 false Chr18: 7112930-7122929 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303204 5265 Fabidae View MSA
124073549 5270 Rosid View MSA
123740047 5271 Pentapetalae View MSA
122787436 5272 Eudicot View MSA
122043907 5273 Angiosperm View MSA
121346553 5274 Embryophyte View MSA
123427921 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.7698 0.0 31.4005    
cufflinks 9.56075 0.0 25.5606    
cufflinks 4.54953 0.0 12.6844   Low
cufflinks 7.75364 0.0 20.8475    
cufflinks 15.8653 0.0 42.5415   High
cufflinks 7.82661 0.0 21.0529    
cufflinks 12.2763 0.0 32.7532    
cufflinks 9.54268 0.0 25.5076    
cufflinks 10.7164 0.0 28.601    
cufflinks 2.216        
cufflinks 0.648       Low
cufflinks 3.973        
cufflinks 8.653     High High
cufflinks 11.73     High High
cufflinks 1.47        
cufflinks 1.985        
cufflinks 2.036        
cufflinks 3.085        
cufflinks 5.152       High
cufflinks 1.286        
cufflinks 1.315        
cufflinks 1.471        
cufflinks 2.743        
cufflinks 0.688       Low
cufflinks 1.767        
cufflinks 1.877        

0 Strain