Gene : Glyma.18G063200 G. max Wm82.a2.v1
Defline:  (1 of 12) KOG1397 - Ca2+/H+ antiporter VCX1 and related proteins Genomic Order:  632
Name:  ? Glyma.18G063200 Secondary Identifier:  ? PAC:30558564
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G063200 0.5kb upstream 0.5kb upstream 5786 true Chr18: 5778744-5784529 Glycine max
Glyma.18G063200 0.5kb upstream 0.5kb upstream 500 false Chr18: 5778744-5779243 Glycine max
Glyma.18G063200 0.5kb downstream 0.5kb downstream 5786 true Chr18: 5779244-5785029 Glycine max
Glyma.18G063200 0.5kb downstream 0.5kb downstream 500 false Chr18: 5784530-5785029 Glycine max
Glyma.18G063200 1.0kb upstream 1.0kb upstream 6286 true Chr18: 5778244-5784529 Glycine max
Glyma.18G063200 1.0kb upstream 1.0kb upstream 1000 false Chr18: 5778244-5779243 Glycine max
Glyma.18G063200 1.0kb downstream 1.0kb downstream 6286 true Chr18: 5779244-5785529 Glycine max
Glyma.18G063200 1.0kb downstream 1.0kb downstream 1000 false Chr18: 5784530-5785529 Glycine max
Glyma.18G063200 2.0kb upstream 2.0kb upstream 7286 true Chr18: 5777244-5784529 Glycine max
Glyma.18G063200 2.0kb upstream 2.0kb upstream 2000 false Chr18: 5777244-5779243 Glycine max
Glyma.18G063200 2.0kb downstream 2.0kb downstream 7286 true Chr18: 5779244-5786529 Glycine max
Glyma.18G063200 2.0kb downstream 2.0kb downstream 2000 false Chr18: 5784530-5786529 Glycine max
Glyma.18G063200 5.0kb upstream 5.0kb upstream 10286 true Chr18: 5774244-5784529 Glycine max
Glyma.18G063200 5.0kb upstream 5.0kb upstream 5000 false Chr18: 5774244-5779243 Glycine max
Glyma.18G063200 5.0kb downstream 5.0kb downstream 10286 true Chr18: 5779244-5789529 Glycine max
Glyma.18G063200 5.0kb downstream 5.0kb downstream 5000 false Chr18: 5784530-5789529 Glycine max
Glyma.18G063200 10.0kb upstream 10.0kb upstream 15286 true Chr18: 5769244-5784529 Glycine max
Glyma.18G063200 10.0kb upstream 10.0kb upstream 10000 false Chr18: 5769244-5779243 Glycine max
Glyma.18G063200 10.0kb downstream 10.0kb downstream 15286 true Chr18: 5779244-5794529 Glycine max
Glyma.18G063200 10.0kb downstream 10.0kb downstream 10000 false Chr18: 5784530-5794529 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309507 5265 Fabidae View MSA
124071576 5270 Rosid View MSA
123745086 5271 Pentapetalae View MSA
122771361 5272 Eudicot View MSA
122048075 5273 Angiosperm View MSA
121310844 5274 Embryophyte View MSA
123427763 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.856696 0.0 3.09574    
cufflinks 4.02387 0.0 12.2233    
cufflinks 4.36922 0.0 13.0524    
cufflinks 28.6075 0.0 76.791 High High
cufflinks 0.426736 0.0 1.60142   Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 12.9605 0.0 34.9743    
cufflinks 13.5534 0.0 36.466    
cufflinks 0.93154 0.0 3.34522    
cufflinks 6.84       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.563        
cufflinks 0.003     Low Low
cufflinks 0.006     Low Low
cufflinks 0.029     Low  
cufflinks 0.318        
cufflinks 0.08        
cufflinks 1.0        
cufflinks 3.599       High
cufflinks 0.426        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.707        
cufflinks 7.484     High High
cufflinks 0.007     Low Low
cufflinks 0.553        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain