Gene : Glyma.18G113100 G. max Wm82.a2.v1
Defline:  (1 of 27) PTHR31642:SF57 - SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE Genomic Order:  1131
Name:  ? Glyma.18G113100 Secondary Identifier:  ? PAC:30558423
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-361 Glycine max pathologic  
Gmax PWY-6040 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G113100 0.5kb upstream 0.5kb upstream 3251 true Chr18: 13453044-13456294 Glycine max
Glyma.18G113100 0.5kb upstream 0.5kb upstream 500 false Chr18: 13453044-13453543 Glycine max
Glyma.18G113100 0.5kb downstream 0.5kb downstream 3251 true Chr18: 13453544-13456794 Glycine max
Glyma.18G113100 0.5kb downstream 0.5kb downstream 500 false Chr18: 13456295-13456794 Glycine max
Glyma.18G113100 1.0kb upstream 1.0kb upstream 3751 true Chr18: 13452544-13456294 Glycine max
Glyma.18G113100 1.0kb upstream 1.0kb upstream 1000 false Chr18: 13452544-13453543 Glycine max
Glyma.18G113100 1.0kb downstream 1.0kb downstream 3751 true Chr18: 13453544-13457294 Glycine max
Glyma.18G113100 1.0kb downstream 1.0kb downstream 1000 false Chr18: 13456295-13457294 Glycine max
Glyma.18G113100 2.0kb upstream 2.0kb upstream 4751 true Chr18: 13451544-13456294 Glycine max
Glyma.18G113100 2.0kb upstream 2.0kb upstream 2000 false Chr18: 13451544-13453543 Glycine max
Glyma.18G113100 2.0kb downstream 2.0kb downstream 4751 true Chr18: 13453544-13458294 Glycine max
Glyma.18G113100 2.0kb downstream 2.0kb downstream 2000 false Chr18: 13456295-13458294 Glycine max
Glyma.18G113100 5.0kb upstream 5.0kb upstream 7751 true Chr18: 13448544-13456294 Glycine max
Glyma.18G113100 5.0kb upstream 5.0kb upstream 5000 false Chr18: 13448544-13453543 Glycine max
Glyma.18G113100 5.0kb downstream 5.0kb downstream 7751 true Chr18: 13453544-13461294 Glycine max
Glyma.18G113100 5.0kb downstream 5.0kb downstream 5000 false Chr18: 13456295-13461294 Glycine max
Glyma.18G113100 10.0kb upstream 10.0kb upstream 12751 true Chr18: 13443544-13456294 Glycine max
Glyma.18G113100 10.0kb upstream 10.0kb upstream 10000 false Chr18: 13443544-13453543 Glycine max
Glyma.18G113100 10.0kb downstream 10.0kb downstream 12751 true Chr18: 13453544-13466294 Glycine max
Glyma.18G113100 10.0kb downstream 10.0kb downstream 10000 false Chr18: 13456295-13466294 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792312 5273 Angiosperm View MSA
122298352 5265 Fabidae View MSA
124036429 5270 Rosid View MSA
123609777 5271 Pentapetalae View MSA
122797299 5272 Eudicot View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 51.4305 0.0 144.314 High  
cufflinks 75.9088 0.0 224.131 High High
cufflinks 9.42423 0.0 25.7374    
cufflinks 21.9624 0.0 58.6469 High  
cufflinks 25.1827 0.0 67.3863 High  
cufflinks 41.1424 0.0 112.98 High  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 40.0593 0.0 110.017 High  
cufflinks 2.07263 0.0 6.85455   Low
cufflinks 14.448     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 9.05     High  
cufflinks 8.996     High  
cufflinks 0.838       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 11.181     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.689        
cufflinks 24.162     High  
cufflinks 15.809     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 17.42     High  
cufflinks 34.437     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 13.619     High  
cufflinks 0.055     Low Low

0 Strain