Gene : Glyma.18G116300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10742:SF238 - POLYAMINE OXIDASE 3-RELATED Genomic Order:  1163
Name:  ? Glyma.18G116300 Secondary Identifier:  ? PAC:30554548
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6441 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G116300 0.5kb upstream 0.5kb upstream 4766 true Chr18: 14228252-14233017 Glycine max
Glyma.18G116300 0.5kb upstream 0.5kb upstream 500 false Chr18: 14228252-14228751 Glycine max
Glyma.18G116300 0.5kb downstream 0.5kb downstream 4766 true Chr18: 14228752-14233517 Glycine max
Glyma.18G116300 0.5kb downstream 0.5kb downstream 500 false Chr18: 14233018-14233517 Glycine max
Glyma.18G116300 1.0kb upstream 1.0kb upstream 5266 true Chr18: 14227752-14233017 Glycine max
Glyma.18G116300 1.0kb upstream 1.0kb upstream 1000 false Chr18: 14227752-14228751 Glycine max
Glyma.18G116300 1.0kb downstream 1.0kb downstream 5266 true Chr18: 14228752-14234017 Glycine max
Glyma.18G116300 1.0kb downstream 1.0kb downstream 1000 false Chr18: 14233018-14234017 Glycine max
Glyma.18G116300 2.0kb upstream 2.0kb upstream 6266 true Chr18: 14226752-14233017 Glycine max
Glyma.18G116300 2.0kb upstream 2.0kb upstream 2000 false Chr18: 14226752-14228751 Glycine max
Glyma.18G116300 2.0kb downstream 2.0kb downstream 6266 true Chr18: 14228752-14235017 Glycine max
Glyma.18G116300 2.0kb downstream 2.0kb downstream 2000 false Chr18: 14233018-14235017 Glycine max
Glyma.18G116300 5.0kb upstream 5.0kb upstream 9266 true Chr18: 14223752-14233017 Glycine max
Glyma.18G116300 5.0kb upstream 5.0kb upstream 5000 false Chr18: 14223752-14228751 Glycine max
Glyma.18G116300 5.0kb downstream 5.0kb downstream 9266 true Chr18: 14228752-14238017 Glycine max
Glyma.18G116300 5.0kb downstream 5.0kb downstream 5000 false Chr18: 14233018-14238017 Glycine max
Glyma.18G116300 10.0kb upstream 10.0kb upstream 14266 true Chr18: 14218752-14233017 Glycine max
Glyma.18G116300 10.0kb upstream 10.0kb upstream 10000 false Chr18: 14218752-14228751 Glycine max
Glyma.18G116300 10.0kb downstream 10.0kb downstream 14266 true Chr18: 14228752-14243017 Glycine max
Glyma.18G116300 10.0kb downstream 10.0kb downstream 10000 false Chr18: 14233018-14243017 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310798 5265 Fabidae View MSA
124065173 5270 Rosid View MSA
123745734 5271 Pentapetalae View MSA
122788869 5272 Eudicot View MSA
122044597 5273 Angiosperm View MSA
121345919 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.93935 0.0 19.3313    
cufflinks 2.2147 0.0 7.1748    
cufflinks 16.2016 0.0 43.2283   High
cufflinks 6.87616 0.0 19.1639    
cufflinks 2.7218 0.0 8.54179    
cufflinks 1.06651 0.0 3.74311   Low
cufflinks 3.70034 0.0 11.1167    
cufflinks 3.42149 0.0 10.4024    
cufflinks 2.25139 0.0 7.25428    
cufflinks 43.143     High High
cufflinks 8.705     High  
cufflinks 9.885     High  
cufflinks 1.759       Low
cufflinks 0.785       Low
cufflinks 4.967        
cufflinks 4.265        
cufflinks 45.373     High High
cufflinks 8.448     High  
cufflinks 3.079        
cufflinks 5.19        
cufflinks 6.386     High  
cufflinks 4.029        
cufflinks 27.952     High High
cufflinks 9.056     High  
cufflinks 3.656        
cufflinks 24.865     High High

0 Strain