Gene : Glyma.18G116900 G. max Wm82.a2.v1
Defline:  (1 of 3) 2.6.1.45 - Serine--glyoxylate transaminase / SGAT Genomic Order:  1169
Name:  ? Glyma.18G116900 Secondary Identifier:  ? PAC:30556183
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLYSYN-ALA-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G116900 0.5kb upstream 0.5kb upstream 6106 true Chr18: 14360659-14366764 Glycine max
Glyma.18G116900 0.5kb upstream 0.5kb upstream 500 false Chr18: 14360659-14361158 Glycine max
Glyma.18G116900 0.5kb downstream 0.5kb downstream 6106 true Chr18: 14361159-14367264 Glycine max
Glyma.18G116900 0.5kb downstream 0.5kb downstream 500 false Chr18: 14366765-14367264 Glycine max
Glyma.18G116900 1.0kb upstream 1.0kb upstream 6606 true Chr18: 14360159-14366764 Glycine max
Glyma.18G116900 1.0kb upstream 1.0kb upstream 1000 false Chr18: 14360159-14361158 Glycine max
Glyma.18G116900 1.0kb downstream 1.0kb downstream 6606 true Chr18: 14361159-14367764 Glycine max
Glyma.18G116900 1.0kb downstream 1.0kb downstream 1000 false Chr18: 14366765-14367764 Glycine max
Glyma.18G116900 2.0kb upstream 2.0kb upstream 7606 true Chr18: 14359159-14366764 Glycine max
Glyma.18G116900 2.0kb upstream 2.0kb upstream 2000 false Chr18: 14359159-14361158 Glycine max
Glyma.18G116900 2.0kb downstream 2.0kb downstream 7606 true Chr18: 14361159-14368764 Glycine max
Glyma.18G116900 2.0kb downstream 2.0kb downstream 2000 false Chr18: 14366765-14368764 Glycine max
Glyma.18G116900 5.0kb upstream 5.0kb upstream 10606 true Chr18: 14356159-14366764 Glycine max
Glyma.18G116900 5.0kb upstream 5.0kb upstream 5000 false Chr18: 14356159-14361158 Glycine max
Glyma.18G116900 5.0kb downstream 5.0kb downstream 10606 true Chr18: 14361159-14371764 Glycine max
Glyma.18G116900 5.0kb downstream 5.0kb downstream 5000 false Chr18: 14366765-14371764 Glycine max
Glyma.18G116900 10.0kb upstream 10.0kb upstream 15606 true Chr18: 14351159-14366764 Glycine max
Glyma.18G116900 10.0kb upstream 10.0kb upstream 10000 false Chr18: 14351159-14361158 Glycine max
Glyma.18G116900 10.0kb downstream 10.0kb downstream 15606 true Chr18: 14361159-14376764 Glycine max
Glyma.18G116900 10.0kb downstream 10.0kb downstream 10000 false Chr18: 14366765-14376764 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301665 5265 Fabidae View MSA
124065045 5270 Rosid View MSA
123739482 5271 Pentapetalae View MSA
122787135 5272 Eudicot View MSA
122044965 5273 Angiosperm View MSA
121345609 5274 Embryophyte View MSA
123427199 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 242.11 0.0 954.765 High High
cufflinks 11.5774 0.0 35.0554    
cufflinks 25.4291 0.0 77.8141 High  
cufflinks 7.79024 0.0 24.7354    
cufflinks 0.00969916 0.0 0.0468501 Low Low
cufflinks 0.420661 0.0 2.04593    
cufflinks 0.341951 0.0 1.70745    
cufflinks 2.6548 0.0 8.58382    
cufflinks 1.08926 0.0 4.62823    
cufflinks 2.365        
cufflinks 0.01     Low Low
cufflinks 5.633        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low Low
cufflinks 0.014     Low Low
cufflinks 91.455     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.685        
cufflinks 7.261        
cufflinks 96.446     High High
cufflinks 0.009     Low Low
cufflinks 79.857     High High
cufflinks 41.855     High  
cufflinks 0.004     Low Low
cufflinks 129.921     High High
cufflinks 0.035     Low  

0 Strain