Gene : Glyma.18G119400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10794:SF53 - CAAX AMINO TERMINAL PROTEASE FAMILY PROTEIN Genomic Order:  1194
Name:  ? Glyma.18G119400 Secondary Identifier:  ? PAC:30555645
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G119400 0.5kb upstream 0.5kb upstream 6834 true Chr18: 14778459-14785292 Glycine max
Glyma.18G119400 0.5kb upstream 0.5kb upstream 500 false Chr18: 14784793-14785292 Glycine max
Glyma.18G119400 0.5kb downstream 0.5kb downstream 6834 true Chr18: 14777959-14784792 Glycine max
Glyma.18G119400 0.5kb downstream 0.5kb downstream 500 false Chr18: 14777959-14778458 Glycine max
Glyma.18G119400 1.0kb upstream 1.0kb upstream 7334 true Chr18: 14778459-14785792 Glycine max
Glyma.18G119400 1.0kb upstream 1.0kb upstream 1000 false Chr18: 14784793-14785792 Glycine max
Glyma.18G119400 1.0kb downstream 1.0kb downstream 7334 true Chr18: 14777459-14784792 Glycine max
Glyma.18G119400 1.0kb downstream 1.0kb downstream 1000 false Chr18: 14777459-14778458 Glycine max
Glyma.18G119400 2.0kb upstream 2.0kb upstream 8334 true Chr18: 14778459-14786792 Glycine max
Glyma.18G119400 2.0kb upstream 2.0kb upstream 2000 false Chr18: 14784793-14786792 Glycine max
Glyma.18G119400 2.0kb downstream 2.0kb downstream 8334 true Chr18: 14776459-14784792 Glycine max
Glyma.18G119400 2.0kb downstream 2.0kb downstream 2000 false Chr18: 14776459-14778458 Glycine max
Glyma.18G119400 5.0kb upstream 5.0kb upstream 11334 true Chr18: 14778459-14789792 Glycine max
Glyma.18G119400 5.0kb upstream 5.0kb upstream 5000 false Chr18: 14784793-14789792 Glycine max
Glyma.18G119400 5.0kb downstream 5.0kb downstream 11334 true Chr18: 14773459-14784792 Glycine max
Glyma.18G119400 5.0kb downstream 5.0kb downstream 5000 false Chr18: 14773459-14778458 Glycine max
Glyma.18G119400 10.0kb upstream 10.0kb upstream 16334 true Chr18: 14778459-14794792 Glycine max
Glyma.18G119400 10.0kb upstream 10.0kb upstream 10000 false Chr18: 14784793-14794792 Glycine max
Glyma.18G119400 10.0kb downstream 10.0kb downstream 16334 true Chr18: 14768459-14784792 Glycine max
Glyma.18G119400 10.0kb downstream 10.0kb downstream 10000 false Chr18: 14768459-14778458 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305816 5265 Fabidae View MSA
124063785 5270 Rosid View MSA
123740423 5271 Pentapetalae View MSA
122790684 5272 Eudicot View MSA
122042712 5273 Angiosperm View MSA
121349023 5274 Embryophyte View MSA
123428279 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.7796 0.0 45.3352   High
cufflinks 13.9344 0.0 52.0297   High
cufflinks 4.49748 0.0 21.9172    
cufflinks 6.68427 0.0 29.2369    
cufflinks 4.72651 0.0 21.8692    
cufflinks 2.77731 0.0 9.97371   Low
cufflinks 7.90436 0.0 27.3226    
cufflinks 4.4317 0.0 20.6931    
cufflinks 2.89763 0.0 10.5306   Low
cufflinks 0.407        
cufflinks 0.081       Low
cufflinks 0.668        
cufflinks 0.203        
cufflinks 0.301        
cufflinks 0.117        
cufflinks 1.953       High
cufflinks 0.082       Low
cufflinks 0.782        
cufflinks 1.112        
cufflinks 2.251       High
cufflinks 0.064       Low
cufflinks 1.951       High
cufflinks 1.876       High
cufflinks 0.122        
cufflinks 2.118       High
cufflinks 0.119        

0 Strain