Gene : Glyma.18G105400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12300:SF27 - HVA22-LIKE PROTEIN F Genomic Order:  1054
Name:  ? Glyma.18G105400 Secondary Identifier:  ? PAC:30554565
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G105400 0.5kb upstream 0.5kb upstream 2864 true Chr18: 11702349-11705212 Glycine max
Glyma.18G105400 0.5kb upstream 0.5kb upstream 500 false Chr18: 11704713-11705212 Glycine max
Glyma.18G105400 0.5kb downstream 0.5kb downstream 2864 true Chr18: 11701849-11704712 Glycine max
Glyma.18G105400 0.5kb downstream 0.5kb downstream 500 false Chr18: 11701849-11702348 Glycine max
Glyma.18G105400 1.0kb upstream 1.0kb upstream 3364 true Chr18: 11702349-11705712 Glycine max
Glyma.18G105400 1.0kb upstream 1.0kb upstream 1000 false Chr18: 11704713-11705712 Glycine max
Glyma.18G105400 1.0kb downstream 1.0kb downstream 3364 true Chr18: 11701349-11704712 Glycine max
Glyma.18G105400 1.0kb downstream 1.0kb downstream 1000 false Chr18: 11701349-11702348 Glycine max
Glyma.18G105400 2.0kb upstream 2.0kb upstream 4364 true Chr18: 11702349-11706712 Glycine max
Glyma.18G105400 2.0kb upstream 2.0kb upstream 2000 false Chr18: 11704713-11706712 Glycine max
Glyma.18G105400 2.0kb downstream 2.0kb downstream 4364 true Chr18: 11700349-11704712 Glycine max
Glyma.18G105400 2.0kb downstream 2.0kb downstream 2000 false Chr18: 11700349-11702348 Glycine max
Glyma.18G105400 5.0kb upstream 5.0kb upstream 7364 true Chr18: 11702349-11709712 Glycine max
Glyma.18G105400 5.0kb upstream 5.0kb upstream 5000 false Chr18: 11704713-11709712 Glycine max
Glyma.18G105400 5.0kb downstream 5.0kb downstream 7364 true Chr18: 11697349-11704712 Glycine max
Glyma.18G105400 5.0kb downstream 5.0kb downstream 5000 false Chr18: 11697349-11702348 Glycine max
Glyma.18G105400 10.0kb upstream 10.0kb upstream 12364 true Chr18: 11702349-11714712 Glycine max
Glyma.18G105400 10.0kb upstream 10.0kb upstream 10000 false Chr18: 11704713-11714712 Glycine max
Glyma.18G105400 10.0kb downstream 10.0kb downstream 12364 true Chr18: 11692349-11704712 Glycine max
Glyma.18G105400 10.0kb downstream 10.0kb downstream 10000 false Chr18: 11692349-11702348 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122242799 5265 Fabidae Singleton cluster - no MSA
123987435 5270 Rosid Singleton cluster - no MSA
123742916 5271 Pentapetalae View MSA
122793296 5272 Eudicot View MSA
122047958 5273 Angiosperm View MSA
121349779 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.33756 0.0 2.93692   Low
cufflinks 0.607336 0.0 4.5399    
cufflinks 1.20916 0.0 8.75781    
cufflinks 0.737506 0.0 3.56037    
cufflinks 1.06164 0.0 5.30472    
cufflinks 1.04401 0.0 7.29183    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.4533 0.0 10.6467    
cufflinks 2.09656 0.0 9.54499   High
cufflinks 0.597       High
cufflinks 0.121        
cufflinks 0.083     Low  
cufflinks 0.8       High
cufflinks 0.267        
cufflinks 0.02     Low Low
cufflinks 0.074     Low  
cufflinks 0.272        
cufflinks 0.362        
cufflinks 0.064     Low Low
cufflinks 0.175        
cufflinks 0.212        
cufflinks 0.162        
cufflinks 0.122        
cufflinks 0.073        
cufflinks 0.201        
cufflinks 0.252        

0 Strain