Gene : Glyma.18G148700 G. max Wm82.a2.v1
Defline:  (1 of 13) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  1487
Name:  ? Glyma.18G148700 Secondary Identifier:  ? PAC:30554406
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7560 Glycine max pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G148700 0.5kb upstream 0.5kb upstream 4427 true Chr18: 25909828-25914254 Glycine max
Glyma.18G148700 0.5kb upstream 0.5kb upstream 500 false Chr18: 25913755-25914254 Glycine max
Glyma.18G148700 0.5kb downstream 0.5kb downstream 4427 true Chr18: 25909328-25913754 Glycine max
Glyma.18G148700 0.5kb downstream 0.5kb downstream 500 false Chr18: 25909328-25909827 Glycine max
Glyma.18G148700 1.0kb upstream 1.0kb upstream 4927 true Chr18: 25909828-25914754 Glycine max
Glyma.18G148700 1.0kb upstream 1.0kb upstream 1000 false Chr18: 25913755-25914754 Glycine max
Glyma.18G148700 1.0kb downstream 1.0kb downstream 4927 true Chr18: 25908828-25913754 Glycine max
Glyma.18G148700 1.0kb downstream 1.0kb downstream 1000 false Chr18: 25908828-25909827 Glycine max
Glyma.18G148700 2.0kb upstream 2.0kb upstream 5927 true Chr18: 25909828-25915754 Glycine max
Glyma.18G148700 2.0kb upstream 2.0kb upstream 2000 false Chr18: 25913755-25915754 Glycine max
Glyma.18G148700 2.0kb downstream 2.0kb downstream 5927 true Chr18: 25907828-25913754 Glycine max
Glyma.18G148700 2.0kb downstream 2.0kb downstream 2000 false Chr18: 25907828-25909827 Glycine max
Glyma.18G148700 5.0kb upstream 5.0kb upstream 8927 true Chr18: 25909828-25918754 Glycine max
Glyma.18G148700 5.0kb upstream 5.0kb upstream 5000 false Chr18: 25913755-25918754 Glycine max
Glyma.18G148700 5.0kb downstream 5.0kb downstream 8927 true Chr18: 25904828-25913754 Glycine max
Glyma.18G148700 5.0kb downstream 5.0kb downstream 5000 false Chr18: 25904828-25909827 Glycine max
Glyma.18G148700 10.0kb upstream 10.0kb upstream 13927 true Chr18: 25909828-25923754 Glycine max
Glyma.18G148700 10.0kb upstream 10.0kb upstream 10000 false Chr18: 25913755-25923754 Glycine max
Glyma.18G148700 10.0kb downstream 10.0kb downstream 13927 true Chr18: 25899828-25913754 Glycine max
Glyma.18G148700 10.0kb downstream 10.0kb downstream 10000 false Chr18: 25899828-25909827 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301533 5265 Fabidae View MSA
124070864 5270 Rosid View MSA
123742318 5271 Pentapetalae View MSA
122794630 5272 Eudicot View MSA
122048955 5273 Angiosperm View MSA
121351194 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.917594 0.0 3.11795    
cufflinks 1.95343 0.0 5.9999   High
cufflinks 1.28116 0.0 4.15381    
cufflinks 1.67543 0.0 5.24502    
cufflinks 0.0691833 0.0 0.27257 Low Low
cufflinks 1.1513 0.0 3.80559    
cufflinks 0.0583124 0.0 0.231128 Low Low
cufflinks 0.469475 0.0 1.68846    
cufflinks 0.110682 0.0 0.428111 Low Low
cufflinks 0.964        
cufflinks 0.2        
cufflinks 1.751        
cufflinks 0.316        
cufflinks 0.16       Low
cufflinks 0.071       Low
cufflinks 1.654        
cufflinks 0.044     Low Low
cufflinks 0.757        
cufflinks 3.455       High
cufflinks 1.993        
cufflinks 0.202        
cufflinks 2.067        
cufflinks 2.031        
cufflinks 0.65        
cufflinks 1.822        
cufflinks 2.146        

0 Strain