Gene : Glyma.18G139800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31375:SF29 - PECTIN LYASE-LIKE PROTEIN-RELATED Genomic Order:  1398
Name:  ? Glyma.18G139800 Secondary Identifier:  ? PAC:30554569
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1081 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G139800 0.5kb upstream 0.5kb upstream 7147 true Chr18: 21100214-21107360 Glycine max
Glyma.18G139800 0.5kb upstream 0.5kb upstream 500 false Chr18: 21100214-21100713 Glycine max
Glyma.18G139800 0.5kb downstream 0.5kb downstream 7147 true Chr18: 21100714-21107860 Glycine max
Glyma.18G139800 0.5kb downstream 0.5kb downstream 500 false Chr18: 21107361-21107860 Glycine max
Glyma.18G139800 1.0kb upstream 1.0kb upstream 7647 true Chr18: 21099714-21107360 Glycine max
Glyma.18G139800 1.0kb upstream 1.0kb upstream 1000 false Chr18: 21099714-21100713 Glycine max
Glyma.18G139800 1.0kb downstream 1.0kb downstream 7647 true Chr18: 21100714-21108360 Glycine max
Glyma.18G139800 1.0kb downstream 1.0kb downstream 1000 false Chr18: 21107361-21108360 Glycine max
Glyma.18G139800 2.0kb upstream 2.0kb upstream 8647 true Chr18: 21098714-21107360 Glycine max
Glyma.18G139800 2.0kb upstream 2.0kb upstream 2000 false Chr18: 21098714-21100713 Glycine max
Glyma.18G139800 2.0kb downstream 2.0kb downstream 8647 true Chr18: 21100714-21109360 Glycine max
Glyma.18G139800 2.0kb downstream 2.0kb downstream 2000 false Chr18: 21107361-21109360 Glycine max
Glyma.18G139800 5.0kb upstream 5.0kb upstream 11647 true Chr18: 21095714-21107360 Glycine max
Glyma.18G139800 5.0kb upstream 5.0kb upstream 5000 false Chr18: 21095714-21100713 Glycine max
Glyma.18G139800 5.0kb downstream 5.0kb downstream 11647 true Chr18: 21100714-21112360 Glycine max
Glyma.18G139800 5.0kb downstream 5.0kb downstream 5000 false Chr18: 21107361-21112360 Glycine max
Glyma.18G139800 10.0kb upstream 10.0kb upstream 16647 true Chr18: 21090714-21107360 Glycine max
Glyma.18G139800 10.0kb upstream 10.0kb upstream 10000 false Chr18: 21090714-21100713 Glycine max
Glyma.18G139800 10.0kb downstream 10.0kb downstream 16647 true Chr18: 21100714-21117360 Glycine max
Glyma.18G139800 10.0kb downstream 10.0kb downstream 10000 false Chr18: 21107361-21117360 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309692 5265 Fabidae View MSA
124069340 5270 Rosid View MSA
123627867 5271 Pentapetalae View MSA
122795496 5272 Eudicot View MSA
122048202 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121310882 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.776646 0.0 2.68793    
cufflinks 0.335686 0.0 1.23433    
cufflinks 0.244648 0.0 0.912287    
cufflinks 0.151487 0.0 0.577837 Low  
cufflinks 0.390639 0.0 1.42356    
cufflinks 0.143536 0.0 0.548739 Low Low
cufflinks 0.130578 0.0 0.501581 Low Low
cufflinks 1.80344 0.0 5.60361   High
cufflinks 0.912335 0.0 3.10835    
cufflinks 0.652        
cufflinks 0.175        
cufflinks 0.228        
cufflinks 0.717        
cufflinks 0.1       Low
cufflinks 0.011     Low Low
cufflinks 0.429        
cufflinks 0.33        
cufflinks 1.03       High
cufflinks 0.231        
cufflinks 0.376        
cufflinks 0.217        
cufflinks 0.633        
cufflinks 0.442        
cufflinks 0.227        
cufflinks 0.378        
cufflinks 0.335        

0 Strain