Gene : Glyma.18G141200 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR11850//PTHR11850:SF101 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS Genomic Order:  1412
Name:  ? Glyma.18G141200 Secondary Identifier:  ? PAC:30554413
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G141200 0.5kb upstream 0.5kb upstream 13328 true Chr18: 21900516-21913843 Glycine max
Glyma.18G141200 0.5kb upstream 0.5kb upstream 500 false Chr18: 21900516-21901015 Glycine max
Glyma.18G141200 0.5kb downstream 0.5kb downstream 13328 true Chr18: 21901016-21914343 Glycine max
Glyma.18G141200 0.5kb downstream 0.5kb downstream 500 false Chr18: 21913844-21914343 Glycine max
Glyma.18G141200 1.0kb upstream 1.0kb upstream 13828 true Chr18: 21900016-21913843 Glycine max
Glyma.18G141200 1.0kb upstream 1.0kb upstream 1000 false Chr18: 21900016-21901015 Glycine max
Glyma.18G141200 1.0kb downstream 1.0kb downstream 13828 true Chr18: 21901016-21914843 Glycine max
Glyma.18G141200 1.0kb downstream 1.0kb downstream 1000 false Chr18: 21913844-21914843 Glycine max
Glyma.18G141200 2.0kb upstream 2.0kb upstream 14828 true Chr18: 21899016-21913843 Glycine max
Glyma.18G141200 2.0kb upstream 2.0kb upstream 2000 false Chr18: 21899016-21901015 Glycine max
Glyma.18G141200 2.0kb downstream 2.0kb downstream 14828 true Chr18: 21901016-21915843 Glycine max
Glyma.18G141200 2.0kb downstream 2.0kb downstream 2000 false Chr18: 21913844-21915843 Glycine max
Glyma.18G141200 5.0kb upstream 5.0kb upstream 17828 true Chr18: 21896016-21913843 Glycine max
Glyma.18G141200 5.0kb upstream 5.0kb upstream 5000 false Chr18: 21896016-21901015 Glycine max
Glyma.18G141200 5.0kb downstream 5.0kb downstream 17828 true Chr18: 21901016-21918843 Glycine max
Glyma.18G141200 5.0kb downstream 5.0kb downstream 5000 false Chr18: 21913844-21918843 Glycine max
Glyma.18G141200 10.0kb upstream 10.0kb upstream 22828 true Chr18: 21891016-21913843 Glycine max
Glyma.18G141200 10.0kb upstream 10.0kb upstream 10000 false Chr18: 21891016-21901015 Glycine max
Glyma.18G141200 10.0kb downstream 10.0kb downstream 22828 true Chr18: 21901016-21923843 Glycine max
Glyma.18G141200 10.0kb downstream 10.0kb downstream 10000 false Chr18: 21913844-21923843 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310769 5265 Fabidae View MSA
124071044 5270 Rosid View MSA
123750536 5271 Pentapetalae View MSA
122794934 5272 Eudicot View MSA
122051072 5273 Angiosperm View MSA
121351483 5274 Embryophyte View MSA
123428758 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.53459 0.0 6.09619   High
cufflinks 0.633948 0.0 2.5742    
cufflinks 0.0651542 0.0 0.702339 Low Low
cufflinks 0.475945 0.0 2.47461    
cufflinks 0.261719 0.0 1.20502 Low  
cufflinks 0.142258 0.0 0.864996 Low  
cufflinks 3.6617 0.0 11.9238   High
cufflinks 0.101025 0.0 0.684786 Low  
cufflinks 0.573       High
cufflinks 0.004     Low  
cufflinks 0.119     Low  
cufflinks 0.038     Low  
cufflinks 0.024     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.025     Low  
cufflinks 0.239       High
cufflinks 0.125        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.001     Low Low
cufflinks 0.012     Low  

0 Strain