Gene : Glyma.18G145000 G. max Wm82.a2.v1
Defline:  (1 of 77) PF03000 - NPH3 family (NPH3) Genomic Order:  1450
Name:  ? Glyma.18G145000 Secondary Identifier:  ? PAC:30558514
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G145000 0.5kb upstream 0.5kb upstream 4444 true Chr18: 23552516-23556959 Glycine max
Glyma.18G145000 0.5kb upstream 0.5kb upstream 500 false Chr18: 23556460-23556959 Glycine max
Glyma.18G145000 0.5kb downstream 0.5kb downstream 4444 true Chr18: 23552016-23556459 Glycine max
Glyma.18G145000 0.5kb downstream 0.5kb downstream 500 false Chr18: 23552016-23552515 Glycine max
Glyma.18G145000 1.0kb upstream 1.0kb upstream 4944 true Chr18: 23552516-23557459 Glycine max
Glyma.18G145000 1.0kb upstream 1.0kb upstream 1000 false Chr18: 23556460-23557459 Glycine max
Glyma.18G145000 1.0kb downstream 1.0kb downstream 4944 true Chr18: 23551516-23556459 Glycine max
Glyma.18G145000 1.0kb downstream 1.0kb downstream 1000 false Chr18: 23551516-23552515 Glycine max
Glyma.18G145000 2.0kb upstream 2.0kb upstream 5944 true Chr18: 23552516-23558459 Glycine max
Glyma.18G145000 2.0kb upstream 2.0kb upstream 2000 false Chr18: 23556460-23558459 Glycine max
Glyma.18G145000 2.0kb downstream 2.0kb downstream 5944 true Chr18: 23550516-23556459 Glycine max
Glyma.18G145000 2.0kb downstream 2.0kb downstream 2000 false Chr18: 23550516-23552515 Glycine max
Glyma.18G145000 5.0kb upstream 5.0kb upstream 8944 true Chr18: 23552516-23561459 Glycine max
Glyma.18G145000 5.0kb upstream 5.0kb upstream 5000 false Chr18: 23556460-23561459 Glycine max
Glyma.18G145000 5.0kb downstream 5.0kb downstream 8944 true Chr18: 23547516-23556459 Glycine max
Glyma.18G145000 5.0kb downstream 5.0kb downstream 5000 false Chr18: 23547516-23552515 Glycine max
Glyma.18G145000 10.0kb upstream 10.0kb upstream 13944 true Chr18: 23552516-23566459 Glycine max
Glyma.18G145000 10.0kb upstream 10.0kb upstream 10000 false Chr18: 23556460-23566459 Glycine max
Glyma.18G145000 10.0kb downstream 10.0kb downstream 13944 true Chr18: 23542516-23556459 Glycine max
Glyma.18G145000 10.0kb downstream 10.0kb downstream 10000 false Chr18: 23542516-23552515 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253644 5265 Fabidae View MSA
124063063 5270 Rosid View MSA
123741197 5271 Pentapetalae View MSA
122790545 5272 Eudicot View MSA
122042377 5273 Angiosperm View MSA
121350883 5274 Embryophyte View MSA
123381921 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.15232 0.0 5.82066    
cufflinks 1.96539 0.0 8.33963    
cufflinks 5.36667 0.0 16.6586   High
cufflinks 5.97081 0.0 22.1558   High
cufflinks 1.45364 0.0 6.67576    
cufflinks 0.425996 0.0 1.94756   Low
cufflinks 0.749876 0.0 3.04727    
cufflinks 8.25968 0.0 29.6954   High
cufflinks 1.53907 0.0 7.08925    
cufflinks 2.203       High
cufflinks 0.342        
cufflinks 2.327       High
cufflinks 0.39        
cufflinks 0.253       Low
cufflinks 0.152       Low
cufflinks 0.961        
cufflinks 0.21       Low
cufflinks 1.463        
cufflinks 1.014        
cufflinks 0.854        
cufflinks 0.55        
cufflinks 1.049        
cufflinks 1.042        
cufflinks 0.58        
cufflinks 1.156        
cufflinks 0.355        

0 Strain