Gene : Glyma.18G146900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11035 - PTPLA DOMAIN PROTEIN Genomic Order:  1469
Name:  ? Glyma.18G146900 Secondary Identifier:  ? PAC:30555983
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5080 Glycine max pathologic  
Gmax PWY-6433 Glycine max pathologic  
Gmax PWY-6598 Glycine max pathologic  
Gmax PWY-7036 Glycine max pathologic  
Gmax PWY-7601 Glycine max pathologic  
Gmax PWY-7606 Glycine max pathologic  
Gmax PWY-7619 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G146900 0.5kb upstream 0.5kb upstream 4247 true Chr18: 24896188-24900434 Glycine max
Glyma.18G146900 0.5kb upstream 0.5kb upstream 500 false Chr18: 24899935-24900434 Glycine max
Glyma.18G146900 0.5kb downstream 0.5kb downstream 4247 true Chr18: 24895688-24899934 Glycine max
Glyma.18G146900 0.5kb downstream 0.5kb downstream 500 false Chr18: 24895688-24896187 Glycine max
Glyma.18G146900 1.0kb upstream 1.0kb upstream 4747 true Chr18: 24896188-24900934 Glycine max
Glyma.18G146900 1.0kb upstream 1.0kb upstream 1000 false Chr18: 24899935-24900934 Glycine max
Glyma.18G146900 1.0kb downstream 1.0kb downstream 4747 true Chr18: 24895188-24899934 Glycine max
Glyma.18G146900 1.0kb downstream 1.0kb downstream 1000 false Chr18: 24895188-24896187 Glycine max
Glyma.18G146900 2.0kb upstream 2.0kb upstream 5747 true Chr18: 24896188-24901934 Glycine max
Glyma.18G146900 2.0kb upstream 2.0kb upstream 2000 false Chr18: 24899935-24901934 Glycine max
Glyma.18G146900 2.0kb downstream 2.0kb downstream 5747 true Chr18: 24894188-24899934 Glycine max
Glyma.18G146900 2.0kb downstream 2.0kb downstream 2000 false Chr18: 24894188-24896187 Glycine max
Glyma.18G146900 5.0kb upstream 5.0kb upstream 8747 true Chr18: 24896188-24904934 Glycine max
Glyma.18G146900 5.0kb upstream 5.0kb upstream 5000 false Chr18: 24899935-24904934 Glycine max
Glyma.18G146900 5.0kb downstream 5.0kb downstream 8747 true Chr18: 24891188-24899934 Glycine max
Glyma.18G146900 5.0kb downstream 5.0kb downstream 5000 false Chr18: 24891188-24896187 Glycine max
Glyma.18G146900 10.0kb upstream 10.0kb upstream 13747 true Chr18: 24896188-24909934 Glycine max
Glyma.18G146900 10.0kb upstream 10.0kb upstream 10000 false Chr18: 24899935-24909934 Glycine max
Glyma.18G146900 10.0kb downstream 10.0kb downstream 13747 true Chr18: 24886188-24899934 Glycine max
Glyma.18G146900 10.0kb downstream 10.0kb downstream 10000 false Chr18: 24886188-24896187 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302169 5265 Fabidae View MSA
124067090 5270 Rosid View MSA
123747996 5271 Pentapetalae View MSA
122792245 5272 Eudicot View MSA
122043901 5273 Angiosperm View MSA
121347400 5274 Embryophyte View MSA
123425989 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.28324 0.0 13.5993   Low
cufflinks 31.5683 0.0 84.2477 High High
cufflinks 7.57432 0.0 22.0276    
cufflinks 18.2806 0.0 49.3304    
cufflinks 16.1991 0.0 44.0857    
cufflinks 23.4105 0.0 62.6402 High  
cufflinks 5.32936 0.0 16.4455   Low
cufflinks 16.1379 0.0 43.8534    
cufflinks 11.5504 0.0 32.1885    
cufflinks 5.7        
cufflinks 0.262       Low
cufflinks 4.135        
cufflinks 5.459        
cufflinks 7.145     High  
cufflinks 0.117       Low
cufflinks 13.011     High  
cufflinks 2.672        
cufflinks 11.965     High  
cufflinks 13.758     High  
cufflinks 13.782     High  
cufflinks 0.841        
cufflinks 10.384     High  
cufflinks 14.845     High  
cufflinks 0.766       Low
cufflinks 12.297     High  
cufflinks 1.463        

0 Strain