Gene : Glyma.18G134700 G. max Wm82.a2.v1
Defline:  (1 of 57) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1347
Name:  ? Glyma.18G134700 Secondary Identifier:  ? PAC:30558570
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G134700 0.5kb upstream 0.5kb upstream 3461 true Chr18: 19350768-19354228 Glycine max
Glyma.18G134700 0.5kb upstream 0.5kb upstream 500 false Chr18: 19350768-19351267 Glycine max
Glyma.18G134700 0.5kb downstream 0.5kb downstream 3461 true Chr18: 19351268-19354728 Glycine max
Glyma.18G134700 0.5kb downstream 0.5kb downstream 500 false Chr18: 19354229-19354728 Glycine max
Glyma.18G134700 1.0kb upstream 1.0kb upstream 3961 true Chr18: 19350268-19354228 Glycine max
Glyma.18G134700 1.0kb upstream 1.0kb upstream 1000 false Chr18: 19350268-19351267 Glycine max
Glyma.18G134700 1.0kb downstream 1.0kb downstream 3961 true Chr18: 19351268-19355228 Glycine max
Glyma.18G134700 1.0kb downstream 1.0kb downstream 1000 false Chr18: 19354229-19355228 Glycine max
Glyma.18G134700 2.0kb upstream 2.0kb upstream 4961 true Chr18: 19349268-19354228 Glycine max
Glyma.18G134700 2.0kb upstream 2.0kb upstream 2000 false Chr18: 19349268-19351267 Glycine max
Glyma.18G134700 2.0kb downstream 2.0kb downstream 4961 true Chr18: 19351268-19356228 Glycine max
Glyma.18G134700 2.0kb downstream 2.0kb downstream 2000 false Chr18: 19354229-19356228 Glycine max
Glyma.18G134700 5.0kb upstream 5.0kb upstream 7961 true Chr18: 19346268-19354228 Glycine max
Glyma.18G134700 5.0kb upstream 5.0kb upstream 5000 false Chr18: 19346268-19351267 Glycine max
Glyma.18G134700 5.0kb downstream 5.0kb downstream 7961 true Chr18: 19351268-19359228 Glycine max
Glyma.18G134700 5.0kb downstream 5.0kb downstream 5000 false Chr18: 19354229-19359228 Glycine max
Glyma.18G134700 10.0kb upstream 10.0kb upstream 12961 true Chr18: 19341268-19354228 Glycine max
Glyma.18G134700 10.0kb upstream 10.0kb upstream 10000 false Chr18: 19341268-19351267 Glycine max
Glyma.18G134700 10.0kb downstream 10.0kb downstream 12961 true Chr18: 19351268-19364228 Glycine max
Glyma.18G134700 10.0kb downstream 10.0kb downstream 10000 false Chr18: 19354229-19364228 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026168 5273 Angiosperm View MSA
122307514 5265 Fabidae View MSA
124060726 5270 Rosid View MSA
123739079 5271 Pentapetalae View MSA
122791557 5272 Eudicot View MSA
121296211 5274 Embryophyte View MSA
123334413 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.922898 0.0 3.16475   High
cufflinks 0.771673 0.0 2.68935    
cufflinks 0.411826 0.0 1.49826    
cufflinks 0.449036 0.0 1.62769    
cufflinks 0.495751 0.0 1.78939    
cufflinks 0.251612 0.0 0.941413 Low Low
cufflinks 0.654353 0.0 2.31393    
cufflinks 0.401924 0.0 1.46766    
cufflinks 0.816893 0.0 2.83228   High
cufflinks 0.254        
cufflinks 0.166       Low
cufflinks 1.185       High
cufflinks 0.782        
cufflinks 0.742        
cufflinks 0.276        
cufflinks 0.839        
cufflinks 0.249        
cufflinks 1.184       High
cufflinks 0.959        
cufflinks 0.918        
cufflinks 0.132       Low
cufflinks 0.875        
cufflinks 0.936        
cufflinks 0.202       Low
cufflinks 0.821        
cufflinks 0.139       Low

0 Strain