Gene : Glyma.18G135300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR14155:SF123 - RING-H2 FINGER PROTEIN ATL47 Genomic Order:  1353
Name:  ? Glyma.18G135300 Secondary Identifier:  ? PAC:30555154
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G135300 0.5kb upstream 0.5kb upstream 2460 true Chr18: 19642742-19645201 Glycine max
Glyma.18G135300 0.5kb upstream 0.5kb upstream 500 false Chr18: 19642742-19643241 Glycine max
Glyma.18G135300 0.5kb downstream 0.5kb downstream 2460 true Chr18: 19643242-19645701 Glycine max
Glyma.18G135300 0.5kb downstream 0.5kb downstream 500 false Chr18: 19645202-19645701 Glycine max
Glyma.18G135300 1.0kb upstream 1.0kb upstream 2960 true Chr18: 19642242-19645201 Glycine max
Glyma.18G135300 1.0kb upstream 1.0kb upstream 1000 false Chr18: 19642242-19643241 Glycine max
Glyma.18G135300 1.0kb downstream 1.0kb downstream 2960 true Chr18: 19643242-19646201 Glycine max
Glyma.18G135300 1.0kb downstream 1.0kb downstream 1000 false Chr18: 19645202-19646201 Glycine max
Glyma.18G135300 2.0kb upstream 2.0kb upstream 3960 true Chr18: 19641242-19645201 Glycine max
Glyma.18G135300 2.0kb upstream 2.0kb upstream 2000 false Chr18: 19641242-19643241 Glycine max
Glyma.18G135300 2.0kb downstream 2.0kb downstream 3960 true Chr18: 19643242-19647201 Glycine max
Glyma.18G135300 2.0kb downstream 2.0kb downstream 2000 false Chr18: 19645202-19647201 Glycine max
Glyma.18G135300 5.0kb upstream 5.0kb upstream 6960 true Chr18: 19638242-19645201 Glycine max
Glyma.18G135300 5.0kb upstream 5.0kb upstream 5000 false Chr18: 19638242-19643241 Glycine max
Glyma.18G135300 5.0kb downstream 5.0kb downstream 6960 true Chr18: 19643242-19650201 Glycine max
Glyma.18G135300 5.0kb downstream 5.0kb downstream 5000 false Chr18: 19645202-19650201 Glycine max
Glyma.18G135300 10.0kb upstream 10.0kb upstream 11960 true Chr18: 19633242-19645201 Glycine max
Glyma.18G135300 10.0kb upstream 10.0kb upstream 10000 false Chr18: 19633242-19643241 Glycine max
Glyma.18G135300 10.0kb downstream 10.0kb downstream 11960 true Chr18: 19643242-19655201 Glycine max
Glyma.18G135300 10.0kb downstream 10.0kb downstream 10000 false Chr18: 19645202-19655201 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041020 5273 Angiosperm View MSA
122313683 5265 Fabidae View MSA
124071790 5270 Rosid View MSA
123752396 5271 Pentapetalae View MSA
122790664 5272 Eudicot View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.08882 0.0 6.81754    
cufflinks 3.52339 0.0 10.6576   High
cufflinks 1.03436 0.0 3.62839   Low
cufflinks 2.39066 0.0 7.63364    
cufflinks 1.87842 0.0 6.22883    
cufflinks 1.72928 0.0 5.78024    
cufflinks 1.38545 0.0 4.75623    
cufflinks 2.98752 0.0 9.23305    
cufflinks 4.49174 0.0 13.1389   High
cufflinks 1.553        
cufflinks 0.518        
cufflinks 1.48        
cufflinks 1.425        
cufflinks 0.886        
cufflinks 2.361       High
cufflinks 1.749        
cufflinks 0.344       Low
cufflinks 1.138        
cufflinks 4.774       High
cufflinks 0.96        
cufflinks 0.568        
cufflinks 1.634        
cufflinks 1.061        
cufflinks 0.198       Low
cufflinks 1.595        
cufflinks 0.431       Low

0 Strain