Gene : Glyma.18G195900 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR22855:SF38 - ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT ALPHA, CHLOROPLASTIC Genomic Order:  1959
Name:  ? Glyma.18G195900 Secondary Identifier:  ? PAC:30556770
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY0-1264 Glycine max pathologic  
Gmax PWY-4381 Glycine max pathologic  
Gmax PWY-5156 Glycine max pathologic  
Gmax PWY-7388 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G195900 0.5kb upstream 0.5kb upstream 5811 true Chr18: 47054265-47060075 Glycine max
Glyma.18G195900 0.5kb upstream 0.5kb upstream 500 false Chr18: 47054265-47054764 Glycine max
Glyma.18G195900 0.5kb downstream 0.5kb downstream 5811 true Chr18: 47054765-47060575 Glycine max
Glyma.18G195900 0.5kb downstream 0.5kb downstream 500 false Chr18: 47060076-47060575 Glycine max
Glyma.18G195900 1.0kb upstream 1.0kb upstream 6311 true Chr18: 47053765-47060075 Glycine max
Glyma.18G195900 1.0kb upstream 1.0kb upstream 1000 false Chr18: 47053765-47054764 Glycine max
Glyma.18G195900 1.0kb downstream 1.0kb downstream 6311 true Chr18: 47054765-47061075 Glycine max
Glyma.18G195900 1.0kb downstream 1.0kb downstream 1000 false Chr18: 47060076-47061075 Glycine max
Glyma.18G195900 2.0kb upstream 2.0kb upstream 7311 true Chr18: 47052765-47060075 Glycine max
Glyma.18G195900 2.0kb upstream 2.0kb upstream 2000 false Chr18: 47052765-47054764 Glycine max
Glyma.18G195900 2.0kb downstream 2.0kb downstream 7311 true Chr18: 47054765-47062075 Glycine max
Glyma.18G195900 2.0kb downstream 2.0kb downstream 2000 false Chr18: 47060076-47062075 Glycine max
Glyma.18G195900 5.0kb upstream 5.0kb upstream 10311 true Chr18: 47049765-47060075 Glycine max
Glyma.18G195900 5.0kb upstream 5.0kb upstream 5000 false Chr18: 47049765-47054764 Glycine max
Glyma.18G195900 5.0kb downstream 5.0kb downstream 10311 true Chr18: 47054765-47065075 Glycine max
Glyma.18G195900 5.0kb downstream 5.0kb downstream 5000 false Chr18: 47060076-47065075 Glycine max
Glyma.18G195900 10.0kb upstream 10.0kb upstream 15311 true Chr18: 47044765-47060075 Glycine max
Glyma.18G195900 10.0kb upstream 10.0kb upstream 10000 false Chr18: 47044765-47054764 Glycine max
Glyma.18G195900 10.0kb downstream 10.0kb downstream 15311 true Chr18: 47054765-47070075 Glycine max
Glyma.18G195900 10.0kb downstream 10.0kb downstream 10000 false Chr18: 47060076-47070075 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307557 5265 Fabidae View MSA
124065453 5270 Rosid View MSA
123737036 5271 Pentapetalae View MSA
122792152 5272 Eudicot View MSA
122047100 5273 Angiosperm View MSA
121351185 5274 Embryophyte View MSA
123426636 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.6178 0.0 41.9937    
cufflinks 17.9915 0.0 48.7415    
cufflinks 6.36115 0.0 17.1552   Low
cufflinks 19.8817 0.0 54.2704 High  
cufflinks 18.9951 0.0 51.5557    
cufflinks 13.8177 0.0 36.9974    
cufflinks 19.6114 0.0 53.3229    
cufflinks 15.5047 0.0 41.7222    
cufflinks 12.3168 0.0 32.903    
cufflinks 9.665     High  
cufflinks 0.58       Low
cufflinks 6.997        
cufflinks 11.965     High  
cufflinks 15.478     High  
cufflinks 0.694       Low
cufflinks 11.467     High  
cufflinks 3.27        
cufflinks 21.0     High High
cufflinks 11.18     High  
cufflinks 9.96     High  
cufflinks 1.358       Low
cufflinks 11.076     High  
cufflinks 12.279     High  
cufflinks 0.829       Low
cufflinks 10.906     High  
cufflinks 3.087        

0 Strain