Gene : Glyma.18G198400 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR22950:SF256 - AUXIN TRANSPORTER PROTEIN 1-RELATED Genomic Order:  1984
Name:  ? Glyma.18G198400 Secondary Identifier:  ? PAC:30554415
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G198400 0.5kb upstream 0.5kb upstream 9129 true Chr18: 47654820-47663948 Glycine max
Glyma.18G198400 0.5kb upstream 0.5kb upstream 500 false Chr18: 47654820-47655319 Glycine max
Glyma.18G198400 0.5kb downstream 0.5kb downstream 9129 true Chr18: 47655320-47664448 Glycine max
Glyma.18G198400 0.5kb downstream 0.5kb downstream 500 false Chr18: 47663949-47664448 Glycine max
Glyma.18G198400 1.0kb upstream 1.0kb upstream 9629 true Chr18: 47654320-47663948 Glycine max
Glyma.18G198400 1.0kb upstream 1.0kb upstream 1000 false Chr18: 47654320-47655319 Glycine max
Glyma.18G198400 1.0kb downstream 1.0kb downstream 9629 true Chr18: 47655320-47664948 Glycine max
Glyma.18G198400 1.0kb downstream 1.0kb downstream 1000 false Chr18: 47663949-47664948 Glycine max
Glyma.18G198400 2.0kb upstream 2.0kb upstream 10629 true Chr18: 47653320-47663948 Glycine max
Glyma.18G198400 2.0kb upstream 2.0kb upstream 2000 false Chr18: 47653320-47655319 Glycine max
Glyma.18G198400 2.0kb downstream 2.0kb downstream 10629 true Chr18: 47655320-47665948 Glycine max
Glyma.18G198400 2.0kb downstream 2.0kb downstream 2000 false Chr18: 47663949-47665948 Glycine max
Glyma.18G198400 5.0kb upstream 5.0kb upstream 13629 true Chr18: 47650320-47663948 Glycine max
Glyma.18G198400 5.0kb upstream 5.0kb upstream 5000 false Chr18: 47650320-47655319 Glycine max
Glyma.18G198400 5.0kb downstream 5.0kb downstream 13629 true Chr18: 47655320-47668948 Glycine max
Glyma.18G198400 5.0kb downstream 5.0kb downstream 5000 false Chr18: 47663949-47668948 Glycine max
Glyma.18G198400 10.0kb upstream 10.0kb upstream 18629 true Chr18: 47645320-47663948 Glycine max
Glyma.18G198400 10.0kb upstream 10.0kb upstream 10000 false Chr18: 47645320-47655319 Glycine max
Glyma.18G198400 10.0kb downstream 10.0kb downstream 18629 true Chr18: 47655320-47673948 Glycine max
Glyma.18G198400 10.0kb downstream 10.0kb downstream 10000 false Chr18: 47663949-47673948 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310331 5265 Fabidae View MSA
124074044 5270 Rosid View MSA
123753033 5271 Pentapetalae View MSA
122796609 5272 Eudicot View MSA
122045744 5273 Angiosperm View MSA
121347395 5274 Embryophyte View MSA
123427582 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.75408 0.0 9.65248   Low
cufflinks 4.55257 0.0 18.5727    
cufflinks 3.26895 0.0 14.945    
cufflinks 18.9129 0.0 68.0084   High
cufflinks 19.4429 0.0 77.3994   High
cufflinks 4.57302 0.0 18.9971    
cufflinks 5.44755 0.0 20.958    
cufflinks 6.87615 0.0 29.3301    
cufflinks 3.176 0.0 14.4288    
cufflinks 2.078       High
cufflinks 0.136        
cufflinks 0.526        
cufflinks 1.011        
cufflinks 1.485       High
cufflinks 0.011     Low Low
cufflinks 0.293        
cufflinks 0.221        
cufflinks 1.717       High
cufflinks 0.311        
cufflinks 0.294        
cufflinks 0.328        
cufflinks 0.287        
cufflinks 0.523        
cufflinks 0.224        
cufflinks 0.301        
cufflinks 0.147        

0 Strain