Gene : Glyma.18G177800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR33142:SF6 - EXPRESSED PROTEIN Genomic Order:  1778
Name:  ? Glyma.18G177800 Secondary Identifier:  ? PAC:30554311
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G177800 0.5kb upstream 0.5kb upstream 1871 true Chr18: 42408282-42410152 Glycine max
Glyma.18G177800 0.5kb upstream 0.5kb upstream 500 false Chr18: 42408282-42408781 Glycine max
Glyma.18G177800 0.5kb downstream 0.5kb downstream 1871 true Chr18: 42408782-42410652 Glycine max
Glyma.18G177800 0.5kb downstream 0.5kb downstream 500 false Chr18: 42410153-42410652 Glycine max
Glyma.18G177800 1.0kb upstream 1.0kb upstream 2371 true Chr18: 42407782-42410152 Glycine max
Glyma.18G177800 1.0kb upstream 1.0kb upstream 1000 false Chr18: 42407782-42408781 Glycine max
Glyma.18G177800 1.0kb downstream 1.0kb downstream 2371 true Chr18: 42408782-42411152 Glycine max
Glyma.18G177800 1.0kb downstream 1.0kb downstream 1000 false Chr18: 42410153-42411152 Glycine max
Glyma.18G177800 2.0kb upstream 2.0kb upstream 3371 true Chr18: 42406782-42410152 Glycine max
Glyma.18G177800 2.0kb upstream 2.0kb upstream 2000 false Chr18: 42406782-42408781 Glycine max
Glyma.18G177800 2.0kb downstream 2.0kb downstream 3371 true Chr18: 42408782-42412152 Glycine max
Glyma.18G177800 2.0kb downstream 2.0kb downstream 2000 false Chr18: 42410153-42412152 Glycine max
Glyma.18G177800 5.0kb upstream 5.0kb upstream 6371 true Chr18: 42403782-42410152 Glycine max
Glyma.18G177800 5.0kb upstream 5.0kb upstream 5000 false Chr18: 42403782-42408781 Glycine max
Glyma.18G177800 5.0kb downstream 5.0kb downstream 6371 true Chr18: 42408782-42415152 Glycine max
Glyma.18G177800 5.0kb downstream 5.0kb downstream 5000 false Chr18: 42410153-42415152 Glycine max
Glyma.18G177800 10.0kb upstream 10.0kb upstream 11371 true Chr18: 42398782-42410152 Glycine max
Glyma.18G177800 10.0kb upstream 10.0kb upstream 10000 false Chr18: 42398782-42408781 Glycine max
Glyma.18G177800 10.0kb downstream 10.0kb downstream 11371 true Chr18: 42408782-42420152 Glycine max
Glyma.18G177800 10.0kb downstream 10.0kb downstream 10000 false Chr18: 42410153-42420152 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297346 5265 Fabidae View MSA
124070924 5270 Rosid View MSA
123751374 5271 Pentapetalae View MSA
122797531 5272 Eudicot View MSA
122050309 5273 Angiosperm View MSA
121311848 5274 Embryophyte View MSA
123349088 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.77088 0.0 2.86266    
cufflinks 1.26546 0.0 4.55771   High
cufflinks 0.239196 0.0 0.933554   Low
cufflinks 0.726836 0.0 2.69911    
cufflinks 0.335748 0.0 1.29444    
cufflinks 0.23244 0.0 0.90976 Low Low
cufflinks 0.257964 0.0 1.0061   Low
cufflinks 0.986764 0.0 3.60326    
cufflinks 1.03555 0.0 3.77986    
cufflinks 1.188       High
cufflinks 0.055       Low
cufflinks 0.419        
cufflinks 0.304        
cufflinks 0.19        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.805        
cufflinks 0.167        
cufflinks 0.627        
cufflinks 0.948        
cufflinks 0.72        
cufflinks 0.087       Low
cufflinks 0.994       High
cufflinks 0.869        
cufflinks 0.156        
cufflinks 0.709        
cufflinks 0.107       Low

0 Strain