Gene : Glyma.18G222400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23074:SF86 - SPASTIN Genomic Order:  2224
Name:  ? Glyma.18G222400 Secondary Identifier:  ? PAC:30556229
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G222400 0.5kb upstream 0.5kb upstream 7832 true Chr18: 50933902-50941733 Glycine max
Glyma.18G222400 0.5kb upstream 0.5kb upstream 500 false Chr18: 50941234-50941733 Glycine max
Glyma.18G222400 0.5kb downstream 0.5kb downstream 7832 true Chr18: 50933402-50941233 Glycine max
Glyma.18G222400 0.5kb downstream 0.5kb downstream 500 false Chr18: 50933402-50933901 Glycine max
Glyma.18G222400 1.0kb upstream 1.0kb upstream 8332 true Chr18: 50933902-50942233 Glycine max
Glyma.18G222400 1.0kb upstream 1.0kb upstream 1000 false Chr18: 50941234-50942233 Glycine max
Glyma.18G222400 1.0kb downstream 1.0kb downstream 8332 true Chr18: 50932902-50941233 Glycine max
Glyma.18G222400 1.0kb downstream 1.0kb downstream 1000 false Chr18: 50932902-50933901 Glycine max
Glyma.18G222400 2.0kb upstream 2.0kb upstream 9332 true Chr18: 50933902-50943233 Glycine max
Glyma.18G222400 2.0kb upstream 2.0kb upstream 2000 false Chr18: 50941234-50943233 Glycine max
Glyma.18G222400 2.0kb downstream 2.0kb downstream 9332 true Chr18: 50931902-50941233 Glycine max
Glyma.18G222400 2.0kb downstream 2.0kb downstream 2000 false Chr18: 50931902-50933901 Glycine max
Glyma.18G222400 5.0kb upstream 5.0kb upstream 12332 true Chr18: 50933902-50946233 Glycine max
Glyma.18G222400 5.0kb upstream 5.0kb upstream 5000 false Chr18: 50941234-50946233 Glycine max
Glyma.18G222400 5.0kb downstream 5.0kb downstream 12332 true Chr18: 50928902-50941233 Glycine max
Glyma.18G222400 5.0kb downstream 5.0kb downstream 5000 false Chr18: 50928902-50933901 Glycine max
Glyma.18G222400 10.0kb upstream 10.0kb upstream 17332 true Chr18: 50933902-50951233 Glycine max
Glyma.18G222400 10.0kb upstream 10.0kb upstream 10000 false Chr18: 50941234-50951233 Glycine max
Glyma.18G222400 10.0kb downstream 10.0kb downstream 17332 true Chr18: 50923902-50941233 Glycine max
Glyma.18G222400 10.0kb downstream 10.0kb downstream 10000 false Chr18: 50923902-50933901 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300232 5265 Fabidae View MSA
124063142 5270 Rosid View MSA
123736430 5271 Pentapetalae View MSA
122793847 5272 Eudicot View MSA
122042209 5273 Angiosperm View MSA
123428918 5275 Viridiplantae View MSA
121344282 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.31557 0.0 12.6042    
cufflinks 3.34661 0.0 10.1067   Low
cufflinks 5.40476 0.0 15.3309    
cufflinks 4.4672 0.0 12.9628    
cufflinks 4.35957 0.0 12.7151    
cufflinks 5.54805 0.0 15.7204    
cufflinks 3.71008 0.0 11.0844   Low
cufflinks 4.43851 0.0 12.9049    
cufflinks 6.30158 0.0 17.6127   High
cufflinks 0.923       Low
cufflinks 2.723       High
cufflinks 1.629        
cufflinks 1.132        
cufflinks 1.044        
cufflinks 2.999       High
cufflinks 1.256        
cufflinks 1.498        
cufflinks 1.604        
cufflinks 1.071        
cufflinks 1.197        
cufflinks 1.961        
cufflinks 1.247        
cufflinks 1.044        
cufflinks 2.394       High
cufflinks 1.127        
cufflinks 1.638        

0 Strain