Gene : Glyma.18G207400 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11954:SF25 - LS1-LIKE PROTEIN Genomic Order:  2074
Name:  ? Glyma.18G207400 Secondary Identifier:  ? PAC:30556928
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6498 Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G207400 0.5kb upstream 0.5kb upstream 3172 true Chr18: 49134269-49137440 Glycine max
Glyma.18G207400 0.5kb upstream 0.5kb upstream 500 false Chr18: 49136941-49137440 Glycine max
Glyma.18G207400 0.5kb downstream 0.5kb downstream 3172 true Chr18: 49133769-49136940 Glycine max
Glyma.18G207400 0.5kb downstream 0.5kb downstream 500 false Chr18: 49133769-49134268 Glycine max
Glyma.18G207400 1.0kb upstream 1.0kb upstream 3672 true Chr18: 49134269-49137940 Glycine max
Glyma.18G207400 1.0kb upstream 1.0kb upstream 1000 false Chr18: 49136941-49137940 Glycine max
Glyma.18G207400 1.0kb downstream 1.0kb downstream 3672 true Chr18: 49133269-49136940 Glycine max
Glyma.18G207400 1.0kb downstream 1.0kb downstream 1000 false Chr18: 49133269-49134268 Glycine max
Glyma.18G207400 2.0kb upstream 2.0kb upstream 4672 true Chr18: 49134269-49138940 Glycine max
Glyma.18G207400 2.0kb upstream 2.0kb upstream 2000 false Chr18: 49136941-49138940 Glycine max
Glyma.18G207400 2.0kb downstream 2.0kb downstream 4672 true Chr18: 49132269-49136940 Glycine max
Glyma.18G207400 2.0kb downstream 2.0kb downstream 2000 false Chr18: 49132269-49134268 Glycine max
Glyma.18G207400 5.0kb upstream 5.0kb upstream 7672 true Chr18: 49134269-49141940 Glycine max
Glyma.18G207400 5.0kb upstream 5.0kb upstream 5000 false Chr18: 49136941-49141940 Glycine max
Glyma.18G207400 5.0kb downstream 5.0kb downstream 7672 true Chr18: 49129269-49136940 Glycine max
Glyma.18G207400 5.0kb downstream 5.0kb downstream 5000 false Chr18: 49129269-49134268 Glycine max
Glyma.18G207400 10.0kb upstream 10.0kb upstream 12672 true Chr18: 49134269-49146940 Glycine max
Glyma.18G207400 10.0kb upstream 10.0kb upstream 10000 false Chr18: 49136941-49146940 Glycine max
Glyma.18G207400 10.0kb downstream 10.0kb downstream 12672 true Chr18: 49124269-49136940 Glycine max
Glyma.18G207400 10.0kb downstream 10.0kb downstream 10000 false Chr18: 49124269-49134268 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026284 5273 Angiosperm View MSA
122315018 5265 Fabidae View MSA
124069445 5270 Rosid View MSA
123741534 5271 Pentapetalae View MSA
122794012 5272 Eudicot View MSA
121349175 5274 Embryophyte View MSA
123424544 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.8845 0.0 46.732    
cufflinks 8.45734 0.0 37.1032    
cufflinks 0.826074 0.0 4.05705   Low
cufflinks 1.79103 0.0 11.5565    
cufflinks 6.28275 0.0 30.2066    
cufflinks 0.947163 0.0 4.59469   Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 147.3 0.0 547.949 High High
cufflinks 20.1715 0.0 78.7806 High  
cufflinks 28.187     High High
cufflinks 1.112        
cufflinks 0.147       Low
cufflinks 0.756        
cufflinks 0.044     Low Low
cufflinks 0.394        
cufflinks 2.184        
cufflinks 2.689        
cufflinks 0.225       Low
cufflinks 0.294        
cufflinks 3.996        
cufflinks 2.311        
cufflinks 3.709        
cufflinks 1.835        
cufflinks 3.212        
cufflinks 4.063        
cufflinks 1.874        

0 Strain