Gene : Glyma.18G207800 G. max Wm82.a2.v1
Defline:  (1 of 52) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  2078
Name:  ? Glyma.18G207800 Secondary Identifier:  ? PAC:30554918
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G207800 0.5kb upstream 0.5kb upstream 3064 true Chr18: 49260717-49263780 Glycine max
Glyma.18G207800 0.5kb upstream 0.5kb upstream 500 false Chr18: 49260717-49261216 Glycine max
Glyma.18G207800 0.5kb downstream 0.5kb downstream 3064 true Chr18: 49261217-49264280 Glycine max
Glyma.18G207800 0.5kb downstream 0.5kb downstream 500 false Chr18: 49263781-49264280 Glycine max
Glyma.18G207800 1.0kb upstream 1.0kb upstream 3564 true Chr18: 49260217-49263780 Glycine max
Glyma.18G207800 1.0kb upstream 1.0kb upstream 1000 false Chr18: 49260217-49261216 Glycine max
Glyma.18G207800 1.0kb downstream 1.0kb downstream 3564 true Chr18: 49261217-49264780 Glycine max
Glyma.18G207800 1.0kb downstream 1.0kb downstream 1000 false Chr18: 49263781-49264780 Glycine max
Glyma.18G207800 2.0kb upstream 2.0kb upstream 4564 true Chr18: 49259217-49263780 Glycine max
Glyma.18G207800 2.0kb upstream 2.0kb upstream 2000 false Chr18: 49259217-49261216 Glycine max
Glyma.18G207800 2.0kb downstream 2.0kb downstream 4564 true Chr18: 49261217-49265780 Glycine max
Glyma.18G207800 2.0kb downstream 2.0kb downstream 2000 false Chr18: 49263781-49265780 Glycine max
Glyma.18G207800 5.0kb upstream 5.0kb upstream 7564 true Chr18: 49256217-49263780 Glycine max
Glyma.18G207800 5.0kb upstream 5.0kb upstream 5000 false Chr18: 49256217-49261216 Glycine max
Glyma.18G207800 5.0kb downstream 5.0kb downstream 7564 true Chr18: 49261217-49268780 Glycine max
Glyma.18G207800 5.0kb downstream 5.0kb downstream 5000 false Chr18: 49263781-49268780 Glycine max
Glyma.18G207800 10.0kb upstream 10.0kb upstream 12564 true Chr18: 49251217-49263780 Glycine max
Glyma.18G207800 10.0kb upstream 10.0kb upstream 10000 false Chr18: 49251217-49261216 Glycine max
Glyma.18G207800 10.0kb downstream 10.0kb downstream 12564 true Chr18: 49261217-49273780 Glycine max
Glyma.18G207800 10.0kb downstream 10.0kb downstream 10000 false Chr18: 49263781-49273780 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300097 5265 Fabidae View MSA
124068854 5270 Rosid View MSA
123739048 5271 Pentapetalae View MSA
122788284 5272 Eudicot View MSA
122041778 5273 Angiosperm View MSA
121309888 5274 Embryophyte View MSA
123347524 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.70571 0.0 5.43634   High
cufflinks 0.46129 0.0 1.67721    
cufflinks 0.273702 0.0 1.02215    
cufflinks 0.62482 0.0 2.22428    
cufflinks 0.382923 0.0 1.40619    
cufflinks 0.108825 0.0 0.423394 Low Low
cufflinks 0.541595 0.0 1.94725    
cufflinks 0.452978 0.0 1.64849    
cufflinks 0.52959 0.0 1.90776    
cufflinks 0.329        
cufflinks 0.258       Low
cufflinks 0.735       High
cufflinks 0.564        
cufflinks 0.834       High
cufflinks 0.41        
cufflinks 0.535        
cufflinks 0.379        
cufflinks 0.741       High
cufflinks 0.482        
cufflinks 0.513        
cufflinks 0.304       Low
cufflinks 0.589        
cufflinks 0.648        
cufflinks 0.229       Low
cufflinks 0.522        
cufflinks 0.267       Low

0 Strain