Gene : Glyma.01G215500 G. max Wm82.a2.v1
Defline:  (1 of 7) 2.3.3.10 - Hydroxymethylglutaryl-CoA synthase / Hydroxymethylglutaryl coenzyme alpha-condensing enzyme Genomic Order:  2155
Name:  ? Glyma.01G215500 Secondary Identifier:  ? PAC:30544047
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5910 Glycine max pathologic  
Gmax PWY-922 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G215500 0.5kb upstream 0.5kb upstream 6115 true Chr01: 54604652-54610766 Glycine max
Glyma.01G215500 0.5kb upstream 0.5kb upstream 500 false Chr01: 54610267-54610766 Glycine max
Glyma.01G215500 0.5kb downstream 0.5kb downstream 6115 true Chr01: 54604152-54610266 Glycine max
Glyma.01G215500 0.5kb downstream 0.5kb downstream 500 false Chr01: 54604152-54604651 Glycine max
Glyma.01G215500 1.0kb upstream 1.0kb upstream 6615 true Chr01: 54604652-54611266 Glycine max
Glyma.01G215500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 54610267-54611266 Glycine max
Glyma.01G215500 1.0kb downstream 1.0kb downstream 6615 true Chr01: 54603652-54610266 Glycine max
Glyma.01G215500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 54603652-54604651 Glycine max
Glyma.01G215500 2.0kb upstream 2.0kb upstream 7615 true Chr01: 54604652-54612266 Glycine max
Glyma.01G215500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 54610267-54612266 Glycine max
Glyma.01G215500 2.0kb downstream 2.0kb downstream 7615 true Chr01: 54602652-54610266 Glycine max
Glyma.01G215500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 54602652-54604651 Glycine max
Glyma.01G215500 5.0kb upstream 5.0kb upstream 10615 true Chr01: 54604652-54615266 Glycine max
Glyma.01G215500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 54610267-54615266 Glycine max
Glyma.01G215500 5.0kb downstream 5.0kb downstream 10615 true Chr01: 54599652-54610266 Glycine max
Glyma.01G215500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 54599652-54604651 Glycine max
Glyma.01G215500 10.0kb upstream 10.0kb upstream 15615 true Chr01: 54604652-54620266 Glycine max
Glyma.01G215500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 54610267-54620266 Glycine max
Glyma.01G215500 10.0kb downstream 10.0kb downstream 15615 true Chr01: 54594652-54610266 Glycine max
Glyma.01G215500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 54594652-54604651 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311073 5265 Fabidae View MSA
124060634 5270 Rosid View MSA
123746885 5271 Pentapetalae View MSA
122791824 5272 Eudicot View MSA
122042701 5273 Angiosperm View MSA
121346246 5274 Embryophyte View MSA
123424795 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.77013 0.0 16.7338   Low
cufflinks 59.9494 0.0 254.481 High  
cufflinks 11.4961 0.0 39.8008    
cufflinks 23.3192 0.0 84.5623 High  
cufflinks 150.2 0.0 799.294 High High
cufflinks 96.6863 0.0 419.516 High  
cufflinks 27.8251 0.0 98.8565 High  
cufflinks 35.609 0.0 132.367 High  
cufflinks 69.5696 0.0 267.063 High  
cufflinks 20.82     High  
cufflinks 1.858       Low
cufflinks 8.58     High  
cufflinks 29.048     High High
cufflinks 37.63     High High
cufflinks 2.639       Low
cufflinks 14.624     High  
cufflinks 7.475     High  
cufflinks 11.057     High  
cufflinks 31.778     High High
cufflinks 6.362        
cufflinks 3.256        
cufflinks 8.699     High  
cufflinks 24.22     High  
cufflinks 0.967       Low
cufflinks 11.619     High  
cufflinks 7.866     High  

0 Strain