Gene : Glyma.01G003900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11751:SF418 - 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 7 Genomic Order:  39
Name:  ? Glyma.01G003900 Secondary Identifier:  ? PAC:30544596
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ETHYL-PWY Glycine max pathologic  
Gmax PWY-7270 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G003900 0.5kb upstream 0.5kb upstream 2513 true Chr01: 410625-413137 Glycine max
Glyma.01G003900 0.5kb upstream 0.5kb upstream 500 false Chr01: 410625-411124 Glycine max
Glyma.01G003900 0.5kb downstream 0.5kb downstream 2513 true Chr01: 411125-413637 Glycine max
Glyma.01G003900 0.5kb downstream 0.5kb downstream 500 false Chr01: 413138-413637 Glycine max
Glyma.01G003900 1.0kb upstream 1.0kb upstream 3013 true Chr01: 410125-413137 Glycine max
Glyma.01G003900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 410125-411124 Glycine max
Glyma.01G003900 1.0kb downstream 1.0kb downstream 3013 true Chr01: 411125-414137 Glycine max
Glyma.01G003900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 413138-414137 Glycine max
Glyma.01G003900 2.0kb upstream 2.0kb upstream 4013 true Chr01: 409125-413137 Glycine max
Glyma.01G003900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 409125-411124 Glycine max
Glyma.01G003900 2.0kb downstream 2.0kb downstream 4013 true Chr01: 411125-415137 Glycine max
Glyma.01G003900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 413138-415137 Glycine max
Glyma.01G003900 5.0kb upstream 5.0kb upstream 7013 true Chr01: 406125-413137 Glycine max
Glyma.01G003900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 406125-411124 Glycine max
Glyma.01G003900 5.0kb downstream 5.0kb downstream 7013 true Chr01: 411125-418137 Glycine max
Glyma.01G003900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 413138-418137 Glycine max
Glyma.01G003900 10.0kb upstream 10.0kb upstream 12013 true Chr01: 401125-413137 Glycine max
Glyma.01G003900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 401125-411124 Glycine max
Glyma.01G003900 10.0kb downstream 10.0kb downstream 12013 true Chr01: 411125-423137 Glycine max
Glyma.01G003900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 413138-423137 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305165 5265 Fabidae View MSA
124060897 5270 Rosid View MSA
123744717 5271 Pentapetalae View MSA
122791155 5272 Eudicot View MSA
122050984 5273 Angiosperm View MSA
121312233 5274 Embryophyte View MSA
123428176 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0326299 0.0 0.136592 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.70501 0.0 5.76113    
cufflinks 1.05659 0.0 3.73852    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.081007 0.0 0.323805 Low  
cufflinks 0.008     Low  
cufflinks 0.512       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 6.041       High
cufflinks 1.191       High
cufflinks 0.01     Low  
cufflinks 0.009     Low  
cufflinks 0.045     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.017     Low  
cufflinks 0.119        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.017     Low  
cufflinks 0.046     Low  
cufflinks 0.042     Low  
cufflinks 0.244        

0 Strain