Gene : Glyma.18G241700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR34803:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC Genomic Order:  2417
Name:  ? Glyma.18G241700 Secondary Identifier:  ? PAC:30555010
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PHOTOALL-PWY Glycine max pathologic  
Gmax PWY-101 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G241700 0.5kb upstream 0.5kb upstream 2391 true Chr18: 53019111-53021501 Glycine max
Glyma.18G241700 0.5kb upstream 0.5kb upstream 500 false Chr18: 53021002-53021501 Glycine max
Glyma.18G241700 0.5kb downstream 0.5kb downstream 2391 true Chr18: 53018611-53021001 Glycine max
Glyma.18G241700 0.5kb downstream 0.5kb downstream 500 false Chr18: 53018611-53019110 Glycine max
Glyma.18G241700 1.0kb upstream 1.0kb upstream 2891 true Chr18: 53019111-53022001 Glycine max
Glyma.18G241700 1.0kb upstream 1.0kb upstream 1000 false Chr18: 53021002-53022001 Glycine max
Glyma.18G241700 1.0kb downstream 1.0kb downstream 2891 true Chr18: 53018111-53021001 Glycine max
Glyma.18G241700 1.0kb downstream 1.0kb downstream 1000 false Chr18: 53018111-53019110 Glycine max
Glyma.18G241700 2.0kb upstream 2.0kb upstream 3891 true Chr18: 53019111-53023001 Glycine max
Glyma.18G241700 2.0kb upstream 2.0kb upstream 2000 false Chr18: 53021002-53023001 Glycine max
Glyma.18G241700 2.0kb downstream 2.0kb downstream 3891 true Chr18: 53017111-53021001 Glycine max
Glyma.18G241700 2.0kb downstream 2.0kb downstream 2000 false Chr18: 53017111-53019110 Glycine max
Glyma.18G241700 5.0kb upstream 5.0kb upstream 6891 true Chr18: 53019111-53026001 Glycine max
Glyma.18G241700 5.0kb upstream 5.0kb upstream 5000 false Chr18: 53021002-53026001 Glycine max
Glyma.18G241700 5.0kb downstream 5.0kb downstream 6891 true Chr18: 53014111-53021001 Glycine max
Glyma.18G241700 5.0kb downstream 5.0kb downstream 5000 false Chr18: 53014111-53019110 Glycine max
Glyma.18G241700 10.0kb upstream 10.0kb upstream 11891 true Chr18: 53019111-53031001 Glycine max
Glyma.18G241700 10.0kb upstream 10.0kb upstream 10000 false Chr18: 53021002-53031001 Glycine max
Glyma.18G241700 10.0kb downstream 10.0kb downstream 11891 true Chr18: 53009111-53021001 Glycine max
Glyma.18G241700 10.0kb downstream 10.0kb downstream 10000 false Chr18: 53009111-53019110 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040995 5273 Angiosperm View MSA
122306566 5265 Fabidae View MSA
124061167 5270 Rosid View MSA
123750401 5271 Pentapetalae View MSA
122793402 5272 Eudicot View MSA
121343870 5274 Embryophyte View MSA
123424325 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 461.144 0.0 1792.22 High High
cufflinks 299.537 0.0 1028.42 High  
cufflinks 179.091 0.0 552.557 High  
cufflinks 181.296 0.0 563.38 High  
cufflinks 36.5744 0.0 97.6626 High  
cufflinks 19.4212 0.0 52.5173   Low
cufflinks 153.707 0.0 467.975 High  
cufflinks 200.605 0.0 639.037 High  
cufflinks 22.9913 0.0 61.7295 High Low
cufflinks 147.948     High  
cufflinks 2.313        
cufflinks 89.395     High  
cufflinks 1.537       Low
cufflinks 1.081       Low
cufflinks 3.968        
cufflinks 448.548     High High
cufflinks 0.483       Low
cufflinks 79.265     High  
cufflinks 157.744     High  
cufflinks 577.316     High High
cufflinks 2.602        
cufflinks 530.225     High High
cufflinks 378.804     High High
cufflinks 2.614        
cufflinks 513.664     High High
cufflinks 1.394       Low

0 Strain