Gene : Glyma.01G163800 G. max Wm82.a2.v1
Defline:  (1 of 52) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1638
Name:  ? Glyma.01G163800 Secondary Identifier:  ? PAC:30544670
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G163800 0.5kb upstream 0.5kb upstream 2909 true Chr01: 50145671-50148579 Glycine max
Glyma.01G163800 0.5kb upstream 0.5kb upstream 500 false Chr01: 50145671-50146170 Glycine max
Glyma.01G163800 0.5kb downstream 0.5kb downstream 2909 true Chr01: 50146171-50149079 Glycine max
Glyma.01G163800 0.5kb downstream 0.5kb downstream 500 false Chr01: 50148580-50149079 Glycine max
Glyma.01G163800 1.0kb upstream 1.0kb upstream 3409 true Chr01: 50145171-50148579 Glycine max
Glyma.01G163800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50145171-50146170 Glycine max
Glyma.01G163800 1.0kb downstream 1.0kb downstream 3409 true Chr01: 50146171-50149579 Glycine max
Glyma.01G163800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50148580-50149579 Glycine max
Glyma.01G163800 2.0kb upstream 2.0kb upstream 4409 true Chr01: 50144171-50148579 Glycine max
Glyma.01G163800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50144171-50146170 Glycine max
Glyma.01G163800 2.0kb downstream 2.0kb downstream 4409 true Chr01: 50146171-50150579 Glycine max
Glyma.01G163800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50148580-50150579 Glycine max
Glyma.01G163800 5.0kb upstream 5.0kb upstream 7409 true Chr01: 50141171-50148579 Glycine max
Glyma.01G163800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50141171-50146170 Glycine max
Glyma.01G163800 5.0kb downstream 5.0kb downstream 7409 true Chr01: 50146171-50153579 Glycine max
Glyma.01G163800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50148580-50153579 Glycine max
Glyma.01G163800 10.0kb upstream 10.0kb upstream 12409 true Chr01: 50136171-50148579 Glycine max
Glyma.01G163800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50136171-50146170 Glycine max
Glyma.01G163800 10.0kb downstream 10.0kb downstream 12409 true Chr01: 50146171-50158579 Glycine max
Glyma.01G163800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 50148580-50158579 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307062 5265 Fabidae View MSA
124051517 5270 Rosid View MSA
123741798 5271 Pentapetalae View MSA
122789514 5272 Eudicot View MSA
122049493 5273 Angiosperm View MSA
121311435 5274 Embryophyte View MSA
123348731 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.93778 0.0 11.2554    
cufflinks 4.01673 0.0 11.4601    
cufflinks 1.82976 0.0 5.78923   Low
cufflinks 3.5252 0.0 10.2204    
cufflinks 4.30844 0.0 12.2011    
cufflinks 1.65639 0.0 5.32521   Low
cufflinks 4.22402 0.0 11.9786    
cufflinks 4.19643 0.0 11.9047    
cufflinks 2.73676 0.0 8.19389    
cufflinks 2.245        
cufflinks 0.508       Low
cufflinks 3.071        
cufflinks 3.98       High
cufflinks 5.187       High
cufflinks 0.644       Low
cufflinks 2.147        
cufflinks 1.58        
cufflinks 3.092        
cufflinks 4.726       High
cufflinks 1.675        
cufflinks 0.532       Low
cufflinks 2.119        
cufflinks 2.787        
cufflinks 0.878        
cufflinks 1.946        
cufflinks 0.972        

0 Strain