Gene : Glyma.18G234600 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR10314:SF80 - BIFUNCTIONAL L-3-CYANOALANINE SYNTHASE/CYSTEINE SYNTHASE C1, MITOCHONDRIAL Genomic Order:  2346
Name:  ? Glyma.18G234600 Secondary Identifier:  ? PAC:30557350
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CYSTSYN-PWY Glycine max pathologic  
Gmax PWY-6936 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G234600 0.5kb upstream 0.5kb upstream 4259 true Chr18: 52288786-52293044 Glycine max
Glyma.18G234600 0.5kb upstream 0.5kb upstream 500 false Chr18: 52288786-52289285 Glycine max
Glyma.18G234600 0.5kb downstream 0.5kb downstream 4259 true Chr18: 52289286-52293544 Glycine max
Glyma.18G234600 0.5kb downstream 0.5kb downstream 500 false Chr18: 52293045-52293544 Glycine max
Glyma.18G234600 1.0kb upstream 1.0kb upstream 4759 true Chr18: 52288286-52293044 Glycine max
Glyma.18G234600 1.0kb upstream 1.0kb upstream 1000 false Chr18: 52288286-52289285 Glycine max
Glyma.18G234600 1.0kb downstream 1.0kb downstream 4759 true Chr18: 52289286-52294044 Glycine max
Glyma.18G234600 1.0kb downstream 1.0kb downstream 1000 false Chr18: 52293045-52294044 Glycine max
Glyma.18G234600 2.0kb upstream 2.0kb upstream 5759 true Chr18: 52287286-52293044 Glycine max
Glyma.18G234600 2.0kb upstream 2.0kb upstream 2000 false Chr18: 52287286-52289285 Glycine max
Glyma.18G234600 2.0kb downstream 2.0kb downstream 5759 true Chr18: 52289286-52295044 Glycine max
Glyma.18G234600 2.0kb downstream 2.0kb downstream 2000 false Chr18: 52293045-52295044 Glycine max
Glyma.18G234600 5.0kb upstream 5.0kb upstream 8759 true Chr18: 52284286-52293044 Glycine max
Glyma.18G234600 5.0kb upstream 5.0kb upstream 5000 false Chr18: 52284286-52289285 Glycine max
Glyma.18G234600 5.0kb downstream 5.0kb downstream 8759 true Chr18: 52289286-52298044 Glycine max
Glyma.18G234600 5.0kb downstream 5.0kb downstream 5000 false Chr18: 52293045-52298044 Glycine max
Glyma.18G234600 10.0kb upstream 10.0kb upstream 13759 true Chr18: 52279286-52293044 Glycine max
Glyma.18G234600 10.0kb upstream 10.0kb upstream 10000 false Chr18: 52279286-52289285 Glycine max
Glyma.18G234600 10.0kb downstream 10.0kb downstream 13759 true Chr18: 52289286-52303044 Glycine max
Glyma.18G234600 10.0kb downstream 10.0kb downstream 10000 false Chr18: 52293045-52303044 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040912 5273 Angiosperm View MSA
122299589 5265 Fabidae View MSA
124062527 5270 Rosid View MSA
123753614 5271 Pentapetalae View MSA
122790357 5272 Eudicot View MSA
121309765 5274 Embryophyte View MSA
123347430 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 64.1849 0.0 226.848 High High
cufflinks 8.69864 0.0 34.7014    
cufflinks 10.8315 0.0 33.1644    
cufflinks 6.13308 0.0 20.9673    
cufflinks 10.9673 0.0 33.7417    
cufflinks 11.7395 0.0 35.9554    
cufflinks 3.7426 0.0 16.7528   Low
cufflinks 6.52051 0.0 21.9299    
cufflinks 18.7453 0.0 55.6452    
cufflinks 1.162       Low
cufflinks 4.811        
cufflinks 4.336        
cufflinks 4.956        
cufflinks 4.092        
cufflinks 8.782     High High
cufflinks 2.143        
cufflinks 4.144        
cufflinks 4.307        
cufflinks 1.943        
cufflinks 1.772       Low
cufflinks 10.127     High High
cufflinks 2.731        
cufflinks 2.527        
cufflinks 11.99     High High
cufflinks 1.741       Low
cufflinks 5.94        

0 Strain