Gene : Glyma.01G160300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10629:SF30 - DNA (CYTOSINE-5)-METHYLTRANSFERASE CMT1-RELATED Genomic Order:  1603
Name:  ? Glyma.01G160300 Secondary Identifier:  ? PAC:30543963
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G160300 0.5kb upstream 0.5kb upstream 7019 true Chr01: 49878054-49885072 Glycine max
Glyma.01G160300 0.5kb upstream 0.5kb upstream 500 false Chr01: 49878054-49878553 Glycine max
Glyma.01G160300 0.5kb downstream 0.5kb downstream 7019 true Chr01: 49878554-49885572 Glycine max
Glyma.01G160300 0.5kb downstream 0.5kb downstream 500 false Chr01: 49885073-49885572 Glycine max
Glyma.01G160300 1.0kb upstream 1.0kb upstream 7519 true Chr01: 49877554-49885072 Glycine max
Glyma.01G160300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 49877554-49878553 Glycine max
Glyma.01G160300 1.0kb downstream 1.0kb downstream 7519 true Chr01: 49878554-49886072 Glycine max
Glyma.01G160300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 49885073-49886072 Glycine max
Glyma.01G160300 2.0kb upstream 2.0kb upstream 8519 true Chr01: 49876554-49885072 Glycine max
Glyma.01G160300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 49876554-49878553 Glycine max
Glyma.01G160300 2.0kb downstream 2.0kb downstream 8519 true Chr01: 49878554-49887072 Glycine max
Glyma.01G160300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 49885073-49887072 Glycine max
Glyma.01G160300 5.0kb upstream 5.0kb upstream 11519 true Chr01: 49873554-49885072 Glycine max
Glyma.01G160300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 49873554-49878553 Glycine max
Glyma.01G160300 5.0kb downstream 5.0kb downstream 11519 true Chr01: 49878554-49890072 Glycine max
Glyma.01G160300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 49885073-49890072 Glycine max
Glyma.01G160300 10.0kb upstream 10.0kb upstream 16519 true Chr01: 49868554-49885072 Glycine max
Glyma.01G160300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 49868554-49878553 Glycine max
Glyma.01G160300 10.0kb downstream 10.0kb downstream 16519 true Chr01: 49878554-49895072 Glycine max
Glyma.01G160300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 49885073-49895072 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297560 5265 Fabidae View MSA
124071027 5270 Rosid View MSA
123743070 5271 Pentapetalae View MSA
122794759 5272 Eudicot View MSA
122046536 5273 Angiosperm View MSA
121345495 5274 Embryophyte View MSA
123428443 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.218552 0.0 1.08478   Low
cufflinks 15.329 0.0 46.4696   High
cufflinks 1.36396 0.0 4.75744    
cufflinks 3.82853 0.0 12.7385    
cufflinks 7.64044 0.0 23.0733    
cufflinks 3.71935 0.0 12.5032    
cufflinks 4.81155 0.0 15.4029    
cufflinks 3.92551 0.0 13.0166    
cufflinks 7.00873 0.0 27.6143    
cufflinks 2.234        
cufflinks 0.89       Low
cufflinks 1.45        
cufflinks 2.975        
cufflinks 3.315        
cufflinks 0.372       Low
cufflinks 5.111       High
cufflinks 2.582        
cufflinks 0.903       Low
cufflinks 5.917       High
cufflinks 4.895        
cufflinks 1.102        
cufflinks 5.461       High
cufflinks 4.997        
cufflinks 0.565       Low
cufflinks 3.877        
cufflinks 1.684        

0 Strain