Gene : Glyma.01G171800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11247:SF25 - LIPID PHOSPHATE PHOSPHATASE EPSILON 1, CHLOROPLASTIC-RELATED Genomic Order:  1718
Name:  ? Glyma.01G171800 Secondary Identifier:  ? PAC:30544632
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRIGLSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G171800 0.5kb upstream 0.5kb upstream 4614 true Chr01: 50907349-50911962 Glycine max
Glyma.01G171800 0.5kb upstream 0.5kb upstream 500 false Chr01: 50907349-50907848 Glycine max
Glyma.01G171800 0.5kb downstream 0.5kb downstream 4614 true Chr01: 50907849-50912462 Glycine max
Glyma.01G171800 0.5kb downstream 0.5kb downstream 500 false Chr01: 50911963-50912462 Glycine max
Glyma.01G171800 1.0kb upstream 1.0kb upstream 5114 true Chr01: 50906849-50911962 Glycine max
Glyma.01G171800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50906849-50907848 Glycine max
Glyma.01G171800 1.0kb downstream 1.0kb downstream 5114 true Chr01: 50907849-50912962 Glycine max
Glyma.01G171800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50911963-50912962 Glycine max
Glyma.01G171800 2.0kb upstream 2.0kb upstream 6114 true Chr01: 50905849-50911962 Glycine max
Glyma.01G171800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50905849-50907848 Glycine max
Glyma.01G171800 2.0kb downstream 2.0kb downstream 6114 true Chr01: 50907849-50913962 Glycine max
Glyma.01G171800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50911963-50913962 Glycine max
Glyma.01G171800 5.0kb upstream 5.0kb upstream 9114 true Chr01: 50902849-50911962 Glycine max
Glyma.01G171800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50902849-50907848 Glycine max
Glyma.01G171800 5.0kb downstream 5.0kb downstream 9114 true Chr01: 50907849-50916962 Glycine max
Glyma.01G171800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50911963-50916962 Glycine max
Glyma.01G171800 10.0kb upstream 10.0kb upstream 14114 true Chr01: 50897849-50911962 Glycine max
Glyma.01G171800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50897849-50907848 Glycine max
Glyma.01G171800 10.0kb downstream 10.0kb downstream 14114 true Chr01: 50907849-50921962 Glycine max
Glyma.01G171800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 50911963-50921962 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308854 5265 Fabidae View MSA
124066688 5270 Rosid View MSA
123737697 5271 Pentapetalae View MSA
122792032 5272 Eudicot View MSA
122049888 5273 Angiosperm View MSA
121311632 5274 Embryophyte View MSA
123426780 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.7031 0.0 32.104   High
cufflinks 4.48476 0.0 13.7391    
cufflinks 9.75701 0.0 27.0796   High
cufflinks 3.50012 0.0 11.1011    
cufflinks 3.86113 0.0 12.098    
cufflinks 6.52172 0.0 18.9389    
cufflinks 4.32803 0.0 13.3431    
cufflinks 3.24634 0.0 10.4023   Low
cufflinks 4.8157 0.0 14.5774    
cufflinks 2.177        
cufflinks 1.93        
cufflinks 4.492       High
cufflinks 1.139       Low
cufflinks 0.817       Low
cufflinks 5.488     High High
cufflinks 1.26        
cufflinks 6.404     High High
cufflinks 3.457        
cufflinks 1.393        
cufflinks 1.741        
cufflinks 1.31        
cufflinks 1.582        
cufflinks 2.296        
cufflinks 2.659        
cufflinks 1.682        
cufflinks 3.647        

0 Strain