Gene : Glyma.01G162800 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR11670:SF40 - ACONITATE HYDRATASE 1 Genomic Order:  1628
Name:  ? Glyma.01G162800 Secondary Identifier:  ? PAC:30542375
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLYOXYLATE-BYPASS Glycine max pathologic  
Gmax PWY-5464 Glycine max pathologic  
Gmax PWY-561 Glycine max pathologic  
Gmax PWY-5690 Glycine max pathologic  
Gmax PWY-6549 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G162800 0.5kb upstream 0.5kb upstream 8498 true Chr01: 50062087-50070584 Glycine max
Glyma.01G162800 0.5kb upstream 0.5kb upstream 500 false Chr01: 50070085-50070584 Glycine max
Glyma.01G162800 0.5kb downstream 0.5kb downstream 8498 true Chr01: 50061587-50070084 Glycine max
Glyma.01G162800 0.5kb downstream 0.5kb downstream 500 false Chr01: 50061587-50062086 Glycine max
Glyma.01G162800 1.0kb upstream 1.0kb upstream 8998 true Chr01: 50062087-50071084 Glycine max
Glyma.01G162800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50070085-50071084 Glycine max
Glyma.01G162800 1.0kb downstream 1.0kb downstream 8998 true Chr01: 50061087-50070084 Glycine max
Glyma.01G162800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50061087-50062086 Glycine max
Glyma.01G162800 2.0kb upstream 2.0kb upstream 9998 true Chr01: 50062087-50072084 Glycine max
Glyma.01G162800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50070085-50072084 Glycine max
Glyma.01G162800 2.0kb downstream 2.0kb downstream 9998 true Chr01: 50060087-50070084 Glycine max
Glyma.01G162800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50060087-50062086 Glycine max
Glyma.01G162800 5.0kb upstream 5.0kb upstream 12998 true Chr01: 50062087-50075084 Glycine max
Glyma.01G162800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50070085-50075084 Glycine max
Glyma.01G162800 5.0kb downstream 5.0kb downstream 12998 true Chr01: 50057087-50070084 Glycine max
Glyma.01G162800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50057087-50062086 Glycine max
Glyma.01G162800 10.0kb upstream 10.0kb upstream 17998 true Chr01: 50062087-50080084 Glycine max
Glyma.01G162800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50070085-50080084 Glycine max
Glyma.01G162800 10.0kb downstream 10.0kb downstream 17998 true Chr01: 50052087-50070084 Glycine max
Glyma.01G162800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 50052087-50062086 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300043 5265 Fabidae View MSA
124069604 5270 Rosid View MSA
123752886 5271 Pentapetalae View MSA
122795491 5272 Eudicot View MSA
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 48.5132 0.0 149.979 High  
cufflinks 21.7046 0.0 60.2105 High Low
cufflinks 38.5244 0.0 115.438 High  
cufflinks 38.585 0.0 115.059 High  
cufflinks 61.0166 0.0 196.632 High High
cufflinks 53.0351 0.0 166.977 High High
cufflinks 32.8851 0.0 95.5948 High  
cufflinks 32.9606 0.0 96.0667 High  
cufflinks 37.5887 0.0 111.659 High  
cufflinks 16.373     High  
cufflinks 26.367     High  
cufflinks 18.789     High  
cufflinks 37.232     High High
cufflinks 41.664     High High
cufflinks 16.276     High  
cufflinks 15.47     High Low
cufflinks 15.679     High  
cufflinks 27.194     High  
cufflinks 13.261     High Low
cufflinks 27.522     High  
cufflinks 28.755     High  
cufflinks 22.947     High  
cufflinks 15.057     High Low
cufflinks 33.125     High High
cufflinks 21.16     High  
cufflinks 19.819     High  

0 Strain