Gene : Glyma.18G235100 G. max Wm82.a2.v1
Defline:  (1 of 2) PF07086 - Jagunal, ER re-organisation during oogenesis (Jagunal) Genomic Order:  2351
Name:  ? Glyma.18G235100 Secondary Identifier:  ? PAC:30557399
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G235100 0.5kb upstream 0.5kb upstream 8403 true Chr18: 52354888-52363290 Glycine max
Glyma.18G235100 0.5kb upstream 0.5kb upstream 500 false Chr18: 52354888-52355387 Glycine max
Glyma.18G235100 0.5kb downstream 0.5kb downstream 8403 true Chr18: 52355388-52363790 Glycine max
Glyma.18G235100 0.5kb downstream 0.5kb downstream 500 false Chr18: 52363291-52363790 Glycine max
Glyma.18G235100 1.0kb upstream 1.0kb upstream 8903 true Chr18: 52354388-52363290 Glycine max
Glyma.18G235100 1.0kb upstream 1.0kb upstream 1000 false Chr18: 52354388-52355387 Glycine max
Glyma.18G235100 1.0kb downstream 1.0kb downstream 8903 true Chr18: 52355388-52364290 Glycine max
Glyma.18G235100 1.0kb downstream 1.0kb downstream 1000 false Chr18: 52363291-52364290 Glycine max
Glyma.18G235100 2.0kb upstream 2.0kb upstream 9903 true Chr18: 52353388-52363290 Glycine max
Glyma.18G235100 2.0kb upstream 2.0kb upstream 2000 false Chr18: 52353388-52355387 Glycine max
Glyma.18G235100 2.0kb downstream 2.0kb downstream 9903 true Chr18: 52355388-52365290 Glycine max
Glyma.18G235100 2.0kb downstream 2.0kb downstream 2000 false Chr18: 52363291-52365290 Glycine max
Glyma.18G235100 5.0kb upstream 5.0kb upstream 12903 true Chr18: 52350388-52363290 Glycine max
Glyma.18G235100 5.0kb upstream 5.0kb upstream 5000 false Chr18: 52350388-52355387 Glycine max
Glyma.18G235100 5.0kb downstream 5.0kb downstream 12903 true Chr18: 52355388-52368290 Glycine max
Glyma.18G235100 5.0kb downstream 5.0kb downstream 5000 false Chr18: 52363291-52368290 Glycine max
Glyma.18G235100 10.0kb upstream 10.0kb upstream 17903 true Chr18: 52345388-52363290 Glycine max
Glyma.18G235100 10.0kb upstream 10.0kb upstream 10000 false Chr18: 52345388-52355387 Glycine max
Glyma.18G235100 10.0kb downstream 10.0kb downstream 17903 true Chr18: 52355388-52373290 Glycine max
Glyma.18G235100 10.0kb downstream 10.0kb downstream 10000 false Chr18: 52363291-52373290 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300159 5265 Fabidae View MSA
124063562 5270 Rosid View MSA
123743270 5271 Pentapetalae View MSA
122789019 5272 Eudicot View MSA
122045382 5273 Angiosperm View MSA
121344737 5274 Embryophyte View MSA
123427393 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.0689 0.0 13.5315    
cufflinks 4.014 0.0 17.3802    
cufflinks 2.64767 0.0 13.5315   Low
cufflinks 2.97185 0.0 13.8542    
cufflinks 6.42156 0.0 32.9131   High
cufflinks 7.29226 0.0 27.1619   High
cufflinks 3.86861 0.0 17.73    
cufflinks 5.75142 0.0 28.8723    
cufflinks 3.98106 0.0 19.0502    
cufflinks 0.457        
cufflinks 0.316        
cufflinks 0.258       Low
cufflinks 0.687       High
cufflinks 0.82       High
cufflinks 0.518        
cufflinks 0.356        
cufflinks 0.308        
cufflinks 0.302        
cufflinks 0.409        
cufflinks 0.342        
cufflinks 0.505        
cufflinks 0.326        
cufflinks 0.406        
cufflinks 0.371        
cufflinks 0.289       Low
cufflinks 0.423        

0 Strain