Gene : Glyma.01G180800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR34058:SF1 - OXYGEN-EVOLVING ENHANCER PROTEIN 1-1, CHLOROPLASTIC-RELATED Genomic Order:  1808
Name:  ? Glyma.01G180800 Secondary Identifier:  ? PAC:30544075
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Ontology Annotation Displayer

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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G180800 0.5kb upstream 0.5kb upstream 2339 true Chr01: 51698840-51701178 Glycine max
Glyma.01G180800 0.5kb upstream 0.5kb upstream 500 false Chr01: 51700679-51701178 Glycine max
Glyma.01G180800 0.5kb downstream 0.5kb downstream 2339 true Chr01: 51698340-51700678 Glycine max
Glyma.01G180800 0.5kb downstream 0.5kb downstream 500 false Chr01: 51698340-51698839 Glycine max
Glyma.01G180800 1.0kb upstream 1.0kb upstream 2839 true Chr01: 51698840-51701678 Glycine max
Glyma.01G180800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 51700679-51701678 Glycine max
Glyma.01G180800 1.0kb downstream 1.0kb downstream 2839 true Chr01: 51697840-51700678 Glycine max
Glyma.01G180800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 51697840-51698839 Glycine max
Glyma.01G180800 2.0kb upstream 2.0kb upstream 3839 true Chr01: 51698840-51702678 Glycine max
Glyma.01G180800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 51700679-51702678 Glycine max
Glyma.01G180800 2.0kb downstream 2.0kb downstream 3839 true Chr01: 51696840-51700678 Glycine max
Glyma.01G180800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 51696840-51698839 Glycine max
Glyma.01G180800 5.0kb upstream 5.0kb upstream 6839 true Chr01: 51698840-51705678 Glycine max
Glyma.01G180800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 51700679-51705678 Glycine max
Glyma.01G180800 5.0kb downstream 5.0kb downstream 6839 true Chr01: 51693840-51700678 Glycine max
Glyma.01G180800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 51693840-51698839 Glycine max
Glyma.01G180800 10.0kb upstream 10.0kb upstream 11839 true Chr01: 51698840-51710678 Glycine max
Glyma.01G180800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 51700679-51710678 Glycine max
Glyma.01G180800 10.0kb downstream 10.0kb downstream 11839 true Chr01: 51688840-51700678 Glycine max
Glyma.01G180800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 51688840-51698839 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310095 5265 Fabidae View MSA
124063467 5270 Rosid View MSA
123739417 5271 Pentapetalae View MSA
122788254 5272 Eudicot View MSA
122047967 5273 Angiosperm View MSA
121344212 5274 Embryophyte View MSA
123425295 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 245.818 0.0 914.128 High High
cufflinks 207.313 0.0 731.89 High  
cufflinks 49.1709 0.0 136.252 High  
cufflinks 138.368 0.0 446.899 High  
cufflinks 24.9966 0.0 66.8335 High  
cufflinks 20.6537 0.0 55.1014    
cufflinks 248.778 0.0 933.054 High High
cufflinks 86.3249 0.0 258.092 High  
cufflinks 8.46503 0.0 23.4894   Low
cufflinks 141.074     High  
cufflinks 0.146       Low
cufflinks 66.017     High  
cufflinks 0.749        
cufflinks 0.698        
cufflinks 1.466        
cufflinks 462.676     High High
cufflinks 0.364        
cufflinks 74.393     High  
cufflinks 155.368     High  
cufflinks 527.286     High High
cufflinks 0.284       Low
cufflinks 495.954     High High
cufflinks 401.572     High High
cufflinks 0.167       Low
cufflinks 536.868     High High
cufflinks 0.121       Low

0 Strain