Gene : Glyma.18G236500 G. max Wm82.a2.v1
Defline:  (1 of 57) PF00106 - short chain dehydrogenase (adh_short) Genomic Order:  2365
Name:  ? Glyma.18G236500 Secondary Identifier:  ? PAC:30556099
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G236500 0.5kb upstream 0.5kb upstream 1451 true Chr18: 52477857-52479307 Glycine max
Glyma.18G236500 0.5kb upstream 0.5kb upstream 500 false Chr18: 52477857-52478356 Glycine max
Glyma.18G236500 0.5kb downstream 0.5kb downstream 1451 true Chr18: 52478357-52479807 Glycine max
Glyma.18G236500 0.5kb downstream 0.5kb downstream 500 false Chr18: 52479308-52479807 Glycine max
Glyma.18G236500 1.0kb upstream 1.0kb upstream 1951 true Chr18: 52477357-52479307 Glycine max
Glyma.18G236500 1.0kb upstream 1.0kb upstream 1000 false Chr18: 52477357-52478356 Glycine max
Glyma.18G236500 1.0kb downstream 1.0kb downstream 1951 true Chr18: 52478357-52480307 Glycine max
Glyma.18G236500 1.0kb downstream 1.0kb downstream 1000 false Chr18: 52479308-52480307 Glycine max
Glyma.18G236500 2.0kb upstream 2.0kb upstream 2951 true Chr18: 52476357-52479307 Glycine max
Glyma.18G236500 2.0kb upstream 2.0kb upstream 2000 false Chr18: 52476357-52478356 Glycine max
Glyma.18G236500 2.0kb downstream 2.0kb downstream 2951 true Chr18: 52478357-52481307 Glycine max
Glyma.18G236500 2.0kb downstream 2.0kb downstream 2000 false Chr18: 52479308-52481307 Glycine max
Glyma.18G236500 5.0kb upstream 5.0kb upstream 5951 true Chr18: 52473357-52479307 Glycine max
Glyma.18G236500 5.0kb upstream 5.0kb upstream 5000 false Chr18: 52473357-52478356 Glycine max
Glyma.18G236500 5.0kb downstream 5.0kb downstream 5951 true Chr18: 52478357-52484307 Glycine max
Glyma.18G236500 5.0kb downstream 5.0kb downstream 5000 false Chr18: 52479308-52484307 Glycine max
Glyma.18G236500 10.0kb upstream 10.0kb upstream 10951 true Chr18: 52468357-52479307 Glycine max
Glyma.18G236500 10.0kb upstream 10.0kb upstream 10000 false Chr18: 52468357-52478356 Glycine max
Glyma.18G236500 10.0kb downstream 10.0kb downstream 10951 true Chr18: 52478357-52489307 Glycine max
Glyma.18G236500 10.0kb downstream 10.0kb downstream 10000 false Chr18: 52479308-52489307 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122242563 5265 Fabidae Singleton cluster - no MSA
123987241 5270 Rosid Singleton cluster - no MSA
123750697 5271 Pentapetalae View MSA
122773806 5272 Eudicot View MSA
122050882 5273 Angiosperm View MSA
123429133 5275 Viridiplantae View MSA
121351668 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.379693 0.0 1.54722   High
cufflinks 0.183838 0.0 0.798906 Low  
cufflinks 0.50406 0.0 2.02397   High
cufflinks 0.145233 0.0 0.755514 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.175777 0.0 0.762943 Low  
cufflinks 0.155199 0.0 0.681099 Low  
cufflinks 0.087973 0.0 0.420683 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain