Gene : Glyma.01G198800 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31100:SF14 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 21-RELATED Genomic Order:  1988
Name:  ? Glyma.01G198800 Secondary Identifier:  ? PAC:30544303
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G198800 0.5kb upstream 0.5kb upstream 1253 true Chr01: 53269993-53271245 Glycine max
Glyma.01G198800 0.5kb upstream 0.5kb upstream 500 false Chr01: 53269993-53270492 Glycine max
Glyma.01G198800 0.5kb downstream 0.5kb downstream 1253 true Chr01: 53270493-53271745 Glycine max
Glyma.01G198800 0.5kb downstream 0.5kb downstream 500 false Chr01: 53271246-53271745 Glycine max
Glyma.01G198800 1.0kb upstream 1.0kb upstream 1753 true Chr01: 53269493-53271245 Glycine max
Glyma.01G198800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 53269493-53270492 Glycine max
Glyma.01G198800 1.0kb downstream 1.0kb downstream 1753 true Chr01: 53270493-53272245 Glycine max
Glyma.01G198800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 53271246-53272245 Glycine max
Glyma.01G198800 2.0kb upstream 2.0kb upstream 2753 true Chr01: 53268493-53271245 Glycine max
Glyma.01G198800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 53268493-53270492 Glycine max
Glyma.01G198800 2.0kb downstream 2.0kb downstream 2753 true Chr01: 53270493-53273245 Glycine max
Glyma.01G198800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 53271246-53273245 Glycine max
Glyma.01G198800 5.0kb upstream 5.0kb upstream 5753 true Chr01: 53265493-53271245 Glycine max
Glyma.01G198800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 53265493-53270492 Glycine max
Glyma.01G198800 5.0kb downstream 5.0kb downstream 5753 true Chr01: 53270493-53276245 Glycine max
Glyma.01G198800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 53271246-53276245 Glycine max
Glyma.01G198800 10.0kb upstream 10.0kb upstream 10753 true Chr01: 53260493-53271245 Glycine max
Glyma.01G198800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 53260493-53270492 Glycine max
Glyma.01G198800 10.0kb downstream 10.0kb downstream 10753 true Chr01: 53270493-53281245 Glycine max
Glyma.01G198800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 53271246-53281245 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122255174 5265 Fabidae View MSA
123997006 5270 Rosid View MSA
123571372 5271 Pentapetalae View MSA
122606098 5272 Eudicot View MSA
122049731 5273 Angiosperm View MSA
121348557 5274 Embryophyte View MSA
123380913 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0891486 0.0 0.368999 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.291529 0.0 1.15368    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.85629 0.0 12.881   High
cufflinks 0.218465 0.0 0.867638 Low  
cufflinks 0.0488327 0.0 0.210318 Low Low
cufflinks 0.381861 0.0 1.491    
cufflinks 5.13267 0.0 16.768   High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 9.908     High High
cufflinks 0.217        
cufflinks 1.739        
cufflinks 1.97        
cufflinks 23.367     High High
cufflinks 0.022     Low Low
cufflinks 2.861        
cufflinks 0.044     Low Low
cufflinks 0.097     Low  
cufflinks 0.023     Low Low
cufflinks 5.767     High  
cufflinks 0.094        
cufflinks 0.024     Low Low
cufflinks 10.388     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 5.247        

0 Strain