Gene : Glyma.18G238500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12358:SF43 - SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIAL Genomic Order:  2385
Name:  ? Glyma.18G238500 Secondary Identifier:  ? PAC:30555363
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7039 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G238500 0.5kb upstream 0.5kb upstream 4603 true Chr18: 52742806-52747408 Glycine max
Glyma.18G238500 0.5kb upstream 0.5kb upstream 500 false Chr18: 52742806-52743305 Glycine max
Glyma.18G238500 0.5kb downstream 0.5kb downstream 4603 true Chr18: 52743306-52747908 Glycine max
Glyma.18G238500 0.5kb downstream 0.5kb downstream 500 false Chr18: 52747409-52747908 Glycine max
Glyma.18G238500 1.0kb upstream 1.0kb upstream 5103 true Chr18: 52742306-52747408 Glycine max
Glyma.18G238500 1.0kb upstream 1.0kb upstream 1000 false Chr18: 52742306-52743305 Glycine max
Glyma.18G238500 1.0kb downstream 1.0kb downstream 5103 true Chr18: 52743306-52748408 Glycine max
Glyma.18G238500 1.0kb downstream 1.0kb downstream 1000 false Chr18: 52747409-52748408 Glycine max
Glyma.18G238500 2.0kb upstream 2.0kb upstream 6103 true Chr18: 52741306-52747408 Glycine max
Glyma.18G238500 2.0kb upstream 2.0kb upstream 2000 false Chr18: 52741306-52743305 Glycine max
Glyma.18G238500 2.0kb downstream 2.0kb downstream 6103 true Chr18: 52743306-52749408 Glycine max
Glyma.18G238500 2.0kb downstream 2.0kb downstream 2000 false Chr18: 52747409-52749408 Glycine max
Glyma.18G238500 5.0kb upstream 5.0kb upstream 9103 true Chr18: 52738306-52747408 Glycine max
Glyma.18G238500 5.0kb upstream 5.0kb upstream 5000 false Chr18: 52738306-52743305 Glycine max
Glyma.18G238500 5.0kb downstream 5.0kb downstream 9103 true Chr18: 52743306-52752408 Glycine max
Glyma.18G238500 5.0kb downstream 5.0kb downstream 5000 false Chr18: 52747409-52752408 Glycine max
Glyma.18G238500 10.0kb upstream 10.0kb upstream 14103 true Chr18: 52733306-52747408 Glycine max
Glyma.18G238500 10.0kb upstream 10.0kb upstream 10000 false Chr18: 52733306-52743305 Glycine max
Glyma.18G238500 10.0kb downstream 10.0kb downstream 14103 true Chr18: 52743306-52757408 Glycine max
Glyma.18G238500 10.0kb downstream 10.0kb downstream 10000 false Chr18: 52747409-52757408 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303667 5265 Fabidae View MSA
124062992 5270 Rosid View MSA
123747106 5271 Pentapetalae View MSA
122789016 5272 Eudicot View MSA
122043667 5273 Angiosperm View MSA
121344203 5274 Embryophyte View MSA
123380000 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.42048 0.0 11.3563    
cufflinks 4.02864 0.0 12.6438    
cufflinks 3.20695 0.0 10.6207    
cufflinks 4.61742 0.0 13.9211    
cufflinks 2.92724 0.0 13.7799    
cufflinks 1.9863 0.0 10.1413   Low
cufflinks 13.36 0.0 48.6129   High
cufflinks 3.93621 0.0 12.4486    
cufflinks 2.8565 0.0 9.96059    
cufflinks 0.743        
cufflinks 0.189       Low
cufflinks 1.01        
cufflinks 0.766        
cufflinks 0.849        
cufflinks 0.386        
cufflinks 1.085        
cufflinks 0.409        
cufflinks 1.453       High
cufflinks 1.194        
cufflinks 1.351        
cufflinks 0.285       Low
cufflinks 1.33        
cufflinks 1.452       High
cufflinks 0.27       Low
cufflinks 1.267        
cufflinks 0.259       Low

0 Strain